docs: updated software list

includes/data/software.yml

@@ -2085,14 +2085,16 @@ software_modules:
       - {description: 'git-annex allows managing files with git, without checking
           the file contents into git.', markedDefault: false, versionName: '8.20210622'}
     - categories: system, tools
-      defaultVersionName: 0.9.1_py39
+      defaultVersionName: 0.10.0_py39
       description: matlab-proxy is a Python package which enables you to launch MATLAB
         and access it from a web browser.
       package: py-matlab-proxy
       url: https://github.com/mathworks/matlab-proxy
       versions:
       - {description: matlab-proxy is a Python package which enables you to launch
           MATLAB and access it from a web browser., markedDefault: false, versionName: 0.9.1_py39}
+      - {description: matlab-proxy is a Python package which enables you to launch
+          MATLAB and access it from a web browser., markedDefault: false, versionName: 0.10.0_py39}
     - categories: system, tools
       defaultVersionName: '20200731'
       description: Tools for working with Chromium development.
@@ -4494,6 +4496,9 @@ software_modules:
       - {description: kallisto is a program for quantifying abundances of transcripts
           from RNA-Seq data using high-throughput sequencing reads., markedDefault: false,
         versionName: 0.46.1}
+      - {description: kallisto is a program for quantifying abundances of transcripts
+          from RNA-Seq data using high-throughput sequencing reads., markedDefault: false,
+        versionName: 0.50.1}
       - {description: kallisto is a program for quantifying abundances of transcripts
           from RNA-Seq data using high-throughput sequencing reads., markedDefault: true,
         versionName: 0.44.0}

src/docs/software/updates.xml

@@ -5,6 +5,24 @@
 <description>Sherlock software update feed</description>
 <link>https://www.sherlock.stanford.edu/docs/software/list</link>
 <atom:link href="https://www.sherlock.stanford.edu/docs/software/updates.xml" rel="self" type="application/rss+xml"/>
+    <item>
+        <title>New version: biology/kallisto version 0.50.1</title>
+        <description>kallisto is a program for quantifying abundances of transcripts from RNA-Seq data using high-throughput sequencing reads.</description>
+        <link>https://pachterlab.github.io/kallisto/</link>
+        <guid>https://www.sherlock.stanford.edu/docs/software/list/?add:v=0.50.1#kallisto</guid>
+        <category>biology, genomics</category>
+        <author>[email protected] (Kilian Cavalotti)</author>
+        <pubDate>Wed, 29 Nov 2023 13:50:00 -0800</pubDate>
+    </item>
+    <item>
+        <title>New version: system/py-matlab-proxy version 0.10.0_py39</title>
+        <description>matlab-proxy is a Python package which enables you to launch MATLAB and access it from a web browser.</description>
+        <link>https://github.com/mathworks/matlab-proxy</link>
+        <guid>https://www.sherlock.stanford.edu/docs/software/list/?add:v=0.10.0_py39#py-matlab-proxy</guid>
+        <category>system, tools</category>
+        <author>[email protected] (Kilian Cavalotti)</author>
+        <pubDate>Wed, 29 Nov 2023 10:37:32 -0800</pubDate>
+    </item>
     <item>
         <title>New version: system/rclone version 1.65.0</title>
         <description>Rclone is a command line program to sync files and directories to and from</description>
@@ -248,14 +266,5 @@
         <author>[email protected] (Kilian Cavalotti)</author>
         <pubDate>Thu, 31 Aug 2023 13:44:20 -0700</pubDate>
     </item>
-    <item>
-        <title>New version: biology/shapeit version 4.2.2</title>
-        <description>SHAPEIT4 is a fast and accurate method for estimation of haplotypes (aka phasing) for SNP array and high coverage sequencing data.</description>
-        <link>https://odelaneau.github.io/shapeit4/</link>
-        <guid>https://www.sherlock.stanford.edu/docs/software/list/?add:v=4.2.2#shapeit</guid>
-        <category>biology, genomics</category>
-        <author>[email protected] (Kilian Cavalotti)</author>
-        <pubDate>Tue, 29 Aug 2023 17:23:19 -0700</pubDate>
-    </item>
 </channel>
 </rss>