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docs: updated software list
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kcgthb committed Sep 5, 2024
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7 changes: 6 additions & 1 deletion includes/data/software.yml
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Expand Up @@ -4589,14 +4589,16 @@ software_modules:
results and log files generated by other bioinformatics tools., markedDefault: true,
versionName: 1.6_py27}
- categories: biology, genomics
defaultVersionName: 1.8.2_py39
defaultVersionName: 1.10.2_py312
description: Scanpy is a scalable toolkit for analyzing single-cell gene expression
data.
package: py-scanpy
url: https://scanpy.readthedocs.io
versions:
- {description: Scanpy is a scalable toolkit for analyzing single-cell gene
expression data., markedDefault: false, versionName: 1.8.2_py39}
- {description: Scanpy is a scalable toolkit for analyzing single-cell gene
expression data., markedDefault: false, versionName: 1.10.2_py312}
- categories: biology, genomics
defaultVersionName: 0.7.17
description: BWA (Burrows-Wheeler Aligner) is a software package for mapping
Expand Down Expand Up @@ -7033,6 +7035,9 @@ software_modules:
- {description: Numba is a compiler for Python array and numerical functions
that gives you the power to speed up your applications with high performance
functions written directly in Python.., markedDefault: false, versionName: 0.54.1_py39}
- {description: Numba is a compiler for Python array and numerical functions
that gives you the power to speed up your applications with high performance
functions written directly in Python.., markedDefault: false, versionName: 0.60.0_py312}
- {description: Numba is a compiler for Python array and numerical functions
that gives you the power to speed up your applications with high performance
functions written directly in Python.., markedDefault: true, versionName: 0.35.0_py27}
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18 changes: 18 additions & 0 deletions src/docs/software/updates.xml
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<description>Sherlock software update feed</description>
<link>https://www.sherlock.stanford.edu/docs/software/list</link>
<atom:link href="https://www.sherlock.stanford.edu/docs/software/updates.xml" rel="self" type="application/rss+xml"/>
<item>
<title>New version: biology/py-scanpy version 1.10.2_py312</title>
<description>Scanpy is a scalable toolkit for analyzing single-cell gene expression data.</description>
<link>https://scanpy.readthedocs.io</link>
<guid>https://www.sherlock.stanford.edu/docs/software/list/?add:v=1.10.2_py312#py-scanpy</guid>
<category>biology, genomics</category>
<author>[email protected] (Kilian Cavalotti)</author>
<pubDate>Thu, 5 Sep 2024 13:54:33 -0700</pubDate>
</item>
<item>
<title>New version: devel/py-numba version 0.60.0_py312</title>
<description>Numba is a compiler for Python array and numerical functions that gives you the power to speed up your applications with high performance functions written directly in Python..</description>
<link>http://numba.pydata.org</link>
<guid>https://www.sherlock.stanford.edu/docs/software/list/?add:v=0.60.0_py312#py-numba</guid>
<category>devel, lib</category>
<author>[email protected] (Kilian Cavalotti)</author>
<pubDate>Thu, 5 Sep 2024 13:48:19 -0700</pubDate>
</item>
<item>
<title>New version: devel/julia version 1.10.0</title>
<description></description>
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