docs: updated software list

stanford-rc · Mar 6, 2024 · e637907 · e637907
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diff --git a/includes/data/software.yml b/includes/data/software.yml
@@ -2302,6 +2302,9 @@ software_modules:
       - {description: The SciPy library provides many user-friendly and efficient
           numerical routines such as routines for numerical integration and optimization.,
         family: scipy, markedDefault: false, versionName: 1.10.1_py39}
+      - {description: The SciPy library provides many user-friendly and efficient
+          numerical routines such as routines for numerical integration and optimization.,
+        family: scipy, markedDefault: false, versionName: 1.12.0_py312}
       - {description: The SciPy library provides many user-friendly and efficient
           numerical routines such as routines for numerical integration and optimization.,
         family: scipy, markedDefault: true, versionName: 1.1.0_py27}
@@ -3710,6 +3713,12 @@ software_modules:
         properties:
           arch: {gpu: 1}
         versionName: 4.7.0
+      - description: OpenCV (Open Source Computer Vision Library) is an open source
+          computer vision and machine learning software library.
+        markedDefault: false
+        properties:
+          arch: {gpu: 1}
+        versionName: 4.9.0
       - description: OpenCV (Open Source Computer Vision Library) is an open source
           computer vision and machine learning software library.
         markedDefault: true
@@ -5155,7 +5164,7 @@ software_modules:
       - {description: A Python framework for the analysis and visualization of trees.,
         markedDefault: false, versionName: 3.0.0_py27}
     - categories: biology, genomics
-      defaultVersionName: 0.12.0
+      defaultVersionName: 1.10.0
       description: Highly-accurate & wicked fast transcript-level quantification from
         RNA-seq reads using lightweight alignments.
       package: salmon
@@ -5164,6 +5173,9 @@ software_modules:
       - {description: Highly-accurate & wicked fast transcript-level quantification
           from RNA-seq reads using lightweight alignments., markedDefault: false,
         versionName: 0.12.0}
+      - {description: Highly-accurate & wicked fast transcript-level quantification
+          from RNA-seq reads using lightweight alignments., markedDefault: false,
+        versionName: 1.10.0}
     - categories: biology, genomics
       defaultVersionName: 1.1.3_py27
       description: Fit-Hi-C is a tool for assigning statistical confidence estimates
@@ -7097,6 +7109,14 @@ software_modules:
         properties:
           arch: {gpu: 1}
         versionName: 12.2.0
+      - description: CUDA is a parallel computing platform and application programming
+          interface (API) model created by Nvidia. It allows software developers and
+          software engineers to use a CUDA-enabled graphics processing unit (GPU)
+          for general purpose processing.
+        markedDefault: false
+        properties:
+          arch: {gpu: 1}
+        versionName: 12.4.0
       - description: CUDA is a parallel computing platform and application programming
           interface (API) model created by Nvidia. It allows software developers and
           software engineers to use a CUDA-enabled graphics processing unit (GPU)

diff --git a/src/docs/software/updates.xml b/src/docs/software/updates.xml
@@ -5,6 +5,24 @@
 <description>Sherlock software update feed</description>
 <link>https://www.sherlock.stanford.edu/docs/software/list</link>
 <atom:link href="https://www.sherlock.stanford.edu/docs/software/updates.xml" rel="self" type="application/rss+xml"/>
+    <item>
+        <title>New version: biology/salmon version 1.10.0</title>
+        <description>Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments.</description>
+        <link>https://combine-lab.github.io/salmon</link>
+        <guid>https://www.sherlock.stanford.edu/docs/software/list/?add:v=1.10.0#salmon</guid>
+        <category>biology, genomics</category>
+        <author>[email protected] (Kilian Cavalotti)</author>
+        <pubDate>Wed, 6 Mar 2024 14:17:16 -0800</pubDate>
+    </item>
+    <item>
+        <title>New version: devel/cuda version 12.4.0</title>
+        <description>CUDA is a parallel computing platform and application programming interface (API) model created by Nvidia. It allows software developers and software engineers to use a CUDA-enabled graphics processing unit (GPU) for general purpose processing.</description>
+        <link>https://developer.nvidia.com/cuda-toolkit</link>
+        <guid>https://www.sherlock.stanford.edu/docs/software/list/?add:v=12.4.0#cuda</guid>
+        <category>devel, language</category>
+        <author>[email protected] (Kilian Cavalotti)</author>
+        <pubDate>Tue, 5 Mar 2024 14:39:10 -0800</pubDate>
+    </item>
     <item>
         <title>New version: viz/py-plotly version 5.19.0_py312</title>
         <description>Plotly's Python graphing library makes interactive, publication-quality graphs online.</description>
@@ -203,32 +221,5 @@
         <author>[email protected] (Kilian Cavalotti)</author>
         <pubDate>Mon, 8 Jan 2024 14:23:50 -0800</pubDate>
     </item>
-    <item>
-        <title>New version: physics/geos version 3.12.1</title>
-        <description>GEOS is a C/C++ library for computational geometry with a focus on algorithms used in geographic information systems (GIS) software.</description>
-        <link>https://libgeos.org</link>
-        <guid>https://www.sherlock.stanford.edu/docs/software/list/?add:v=3.12.1#geos</guid>
-        <category>physics, geoscience</category>
-        <author>[email protected] (Kilian Cavalotti)</author>
-        <pubDate>Tue, 12 Dec 2023 11:17:10 -0800</pubDate>
-    </item>
-    <item>
-        <title>New version: biology/kallisto version 0.50.1</title>
-        <description>kallisto is a program for quantifying abundances of transcripts from RNA-Seq data using high-throughput sequencing reads.</description>
-        <link>https://pachterlab.github.io/kallisto/</link>
-        <guid>https://www.sherlock.stanford.edu/docs/software/list/?add:v=0.50.1#kallisto</guid>
-        <category>biology, genomics</category>
-        <author>[email protected] (Kilian Cavalotti)</author>
-        <pubDate>Wed, 29 Nov 2023 13:50:00 -0800</pubDate>
-    </item>
-    <item>
-        <title>New version: system/py-matlab-proxy version 0.10.0_py39</title>
-        <description>matlab-proxy is a Python package which enables you to launch MATLAB and access it from a web browser.</description>
-        <link>https://github.com/mathworks/matlab-proxy</link>
-        <guid>https://www.sherlock.stanford.edu/docs/software/list/?add:v=0.10.0_py39#py-matlab-proxy</guid>
-        <category>system, tools</category>
-        <author>[email protected] (Kilian Cavalotti)</author>
-        <pubDate>Wed, 29 Nov 2023 10:37:32 -0800</pubDate>
-    </item>
 </channel>
 </rss>