docs: updated software list

includes/data/software.yml

@@ -3730,6 +3730,9 @@ software_modules:
       versions:
       - {description: GEOS (Geometry Engine - Open Source) is a C++ port of Java Topology
           Suite (JTS)., markedDefault: false, versionName: 3.11.0}
+      - {description: GEOS is a C/C++ library for computational geometry with a focus
+          on algorithms used in geographic information systems (GIS) software., markedDefault: false,
+        versionName: 3.12.1}
       - {description: GEOS (Geometry Engine - Open Source) is a C++ port of Java Topology
           Suite (JTS)., markedDefault: true, versionName: 3.6.2}
     - categories: physics, astronomy

src/docs/software/updates.xml

@@ -5,6 +5,15 @@
 <description>Sherlock software update feed</description>
 <link>https://www.sherlock.stanford.edu/docs/software/list</link>
 <atom:link href="https://www.sherlock.stanford.edu/docs/software/updates.xml" rel="self" type="application/rss+xml"/>
+    <item>
+        <title>New version: physics/geos version 3.12.1</title>
+        <description>GEOS is a C/C++ library for computational geometry with a focus on algorithms used in geographic information systems (GIS) software.</description>
+        <link>https://libgeos.org</link>
+        <guid>https://www.sherlock.stanford.edu/docs/software/list/?add:v=3.12.1#geos</guid>
+        <category>physics, geoscience</category>
+        <author>[email protected] (Kilian Cavalotti)</author>
+        <pubDate>Tue, 12 Dec 2023 11:17:10 -0800</pubDate>
+    </item>
     <item>
         <title>New version: biology/kallisto version 0.50.1</title>
         <description>kallisto is a program for quantifying abundances of transcripts from RNA-Seq data using high-throughput sequencing reads.</description>
@@ -230,41 +239,5 @@
         <author>[email protected] (Kilian Cavalotti)</author>
         <pubDate>Fri, 15 Sep 2023 08:08:08 -0700</pubDate>
     </item>
-    <item>
-        <title>New version: devel/rust version 1.72.0</title>
-        <description>A language empowering everyone to build reliable and efficient software.</description>
-        <link>https://www.rust-lang.org/</link>
-        <guid>https://www.sherlock.stanford.edu/docs/software/list/?add:v=1.72.0#rust</guid>
-        <category>devel, language</category>
-        <author>[email protected] (Mike Hartman)</author>
-        <pubDate>Tue, 12 Sep 2023 12:48:07 -0700</pubDate>
-    </item>
-    <item>
-        <title>New module: biology/dorado version 0.3.4</title>
-        <description>Dorado is a high-performance, easy-to-use, open source basecaller for Oxford Nanopore reads.</description>
-        <link>https://github.com/nanoporetech/dorado</link>
-        <guid>https://www.sherlock.stanford.edu/docs/software/list/?add:v=0.3.4#dorado</guid>
-        <category>biology, genomics</category>
-        <author>[email protected] (Kilian Cavalotti)</author>
-        <pubDate>Thu, 7 Sep 2023 08:58:33 -0700</pubDate>
-    </item>
-    <item>
-        <title>New module: biology/ncbi-vdb version 3.0.7</title>
-        <description>NCBI VDB is the database engine used by NCBI SRA tools.</description>
-        <link>https://github.com/ncbi/ncbi-vdb</link>
-        <guid>https://www.sherlock.stanford.edu/docs/software/list/?add:v=3.0.7#ncbi-vdb</guid>
-        <category>biology, genomics</category>
-        <author>[email protected] (Kilian Cavalotti)</author>
-        <pubDate>Thu, 7 Sep 2023 08:55:47 -0700</pubDate>
-    </item>
-    <item>
-        <title>New version: devel/dotnet version 6.0.413</title>
-        <description>.NET is a free, cross-platform, open source developer platform for building many different types of applications.</description>
-        <link>https://dotnet.microsoft.com/</link>
-        <guid>https://www.sherlock.stanford.edu/docs/software/list/?add:v=6.0.413#dotnet</guid>
-        <category>devel, framework</category>
-        <author>[email protected] (Kilian Cavalotti)</author>
-        <pubDate>Thu, 31 Aug 2023 13:44:20 -0700</pubDate>
-    </item>
 </channel>
 </rss>