Version 0.2.0 (#3)

* Update license header.

* Remove submodules.

* Update pre-commit hooks.

* Update pyproject.toml.

* Re-organize source files and apply pre-commit hooks.

* Set version to 0.1.0.

* Add sympl to requirements.

* Remove deprecated files.

* Update .gitignore.

* Revisit utils/.

* Fix import.

* Remove deprecated files.

* Fix pyproject.toml.

* Add requirements file.

* Clean __init__.

* Revisit domain/.

* Revisit framework/.

* Add numba as optional dependency.

* Revisit burgers/.

* Fix imports.

* Remove device_sync.

* Remove unnecessary files.

* Fix tasmania.burgers.

* Revisit dwarfs.

* Revisit isentropic/.

* Revisit physics/.

* Remove unmaintained files.

* Neglect align index.

* Fix imports.

* Fix stencils with optional arguments.

* Drop device_sync.

* Drop pandas and pydantic, add pint.

* Fix imports.

* Add placeholder field.

* Revisit scripts for benchmarking.

.gitignore

@@ -38,7 +38,7 @@ result_images/
 build/
 dist/
 pip-wheel-metadata/
-tasmania.egg-info/
+*.egg-info/
 .eggs/
 
 # venv
@@ -51,23 +51,4 @@ venv*/
 .DS_Store/
 
 # varia
-buffer/
 docker/xz-0.5.4
-spike/
-todo.ods
-
-# datasets
-data/
-
-# AUTOMATICALLY GENERATED TEXT
-# The text after this comment and up to the end of file
-# has been automatically generated by the gitignore target
-# of the makefile. To prevent this target from failing,
-# no modifications should be applied by non-expert users.
-
-# Files which exceed maximum size allowed by GitHub
-./venv/lib/python3.7/site-packages/numpy/.dylibs/libopenblasp-r0.3.7.dylib
-./venv/lib/python3.7/site-packages/scipy/.dylibs/libopenblasp-r0.3.7.dylib
-./.git/objects/pack/pack-248f6041612231bc3138bd762695a21143a4a892.pack
-
-# END OF AUTOMATICALLY GENERATED TEXT

.pre-commit-config.yaml

@@ -2,7 +2,7 @@
 #
 # Tasmania
 #
-# Copyright (c) 2018-2021, ETH Zurich
+# Copyright (c) 2018-2024, ETH Zurich
 # All rights reserved.
 #
 # This file is part of the Tasmania project. Tasmania is free software:
@@ -25,27 +25,34 @@
 # See https://pre-commit.com/hooks.html for more hooks
 repos:
 -   repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v3.4.0
+    rev: v4.5.0
     hooks:
-    -   id: check-yaml
     -   id: check-added-large-files
+        args: ["--maxkb=20000"]  # maximum size set to 20MB
+    -   id: check-ast
     -   id: check-case-conflict
     -   id: check-json
     -   id: check-merge-conflict
+    -   id: check-yaml
     -   id: debug-statements
     -   id: end-of-file-fixer
     -   id: fix-encoding-pragma
+    -   id: mixed-line-ending
     -   id: requirements-txt-fixer
     -   id: trailing-whitespace
-#-   repo: https://github.com/pre-commit/mirrors-autopep8
-#    rev: v1.4.4
-#    hooks:
-#    -   id: autopep8
 -   repo: https://github.com/pre-commit/pygrep-hooks
-    rev: v1.8.0
+    rev: v1.10.0
     hooks:
+    -   id: python-check-blanket-noqa
+    -   id: python-check-blanket-type-ignore
+    -   id: python-use-type-annotations
     -   id: rst-backticks
 -   repo: https://github.com/psf/black
-    rev: 21.5b1
+    rev: 24.4.0
     hooks:
     -   id: black
+-   repo: https://github.com/PyCQA/autoflake
+    rev: v2.2.1
+    hooks:
+    -   id: autoflake
+        args: [--in-place, --remove-all-unused-imports, --ignore-init-module-imports]

.licensing/LICENSE_HEADER.cpp → _licensing/LICENSE_HEADER.cpp

@@ -1,7 +1,7 @@
 /*
  * Tasmania
  *
- * Copyright (c) 2018-2021, ETH Zurich
+ * Copyright (c) 2018-2024, ETH Zurich
  * All rights reserved.
  *
  * This file is part of the Tasmania project. Tasmania is free software:

.licensing/LICENSE_HEADER.makefile → _licensing/LICENSE_HEADER.makefile

@@ -2,7 +2,7 @@
 #
 # Tasmania
 #
-# Copyright (c) 2018-2021, ETH Zurich
+# Copyright (c) 2018-2024, ETH Zurich
 # All rights reserved.
 #
 # This file is part of the Tasmania project. Tasmania is free software:

.licensing/LICENSE_HEADER.py → _licensing/LICENSE_HEADER.py

@@ -2,7 +2,7 @@
 #
 # Tasmania
 #
-# Copyright (c) 2018-2021, ETH Zurich
+# Copyright (c) 2018-2024, ETH Zurich
 # All rights reserved.
 #
 # This file is part of the Tasmania project. Tasmania is free software:

.licensing/LICENSE_HEADER.sh → _licensing/LICENSE_HEADER.sh

@@ -2,7 +2,7 @@
 #
 # Tasmania
 #
-# Copyright (c) 2018-2021, ETH Zurich
+# Copyright (c) 2018-2024, ETH Zurich
 # All rights reserved.
 #
 # This file is part of the Tasmania project. Tasmania is free software:

.licensing/add_license_header.py → _licensing/add_license_header.py

@@ -2,7 +2,7 @@
 #
 # Tasmania
 #
-# Copyright (c) 2018-2021, ETH Zurich
+# Copyright (c) 2018-2024, ETH Zurich
 # All rights reserved.
 #
 # This file is part of the Tasmania project. Tasmania is free software:

.licensing/remove_license_header.py → _licensing/remove_license_header.py

@@ -2,7 +2,7 @@
 #
 # Tasmania
 #
-# Copyright (c) 2018-2021, ETH Zurich
+# Copyright (c) 2018-2024, ETH Zurich
 # All rights reserved.
 #
 # This file is part of the Tasmania project. Tasmania is free software: