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426 replace komplexity with heyfastq #431

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Ulthran wants to merge 2 commits into main from 426-replace-komplexity-with-heyfastq

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Ulthran commented Dec 11, 2023

I have run pytest .tests/ on a local deployment and the tests passed successfully
If this adds a new output file, I have added a check to .tests/targets.txt
If this fixes a bug, I have added or modified an appropriate test
If this adds or modifies a rule that uses FASTQ files, the input accepts gzipped FASTQ and outputs gzipped FASTQ, or marks uncompressed FASTQ output as temp

If this is for a release:

I have updated documentation
I have updated all conda pin files (snakedeploy pin-conda-envs workflow/envs/*.yml)
I have updated the hardcoded version at the top of install.sh to match what this release's version will be
I have created a release archive that will be attached to this release (bash dev_scripts/generate_archive.sh)

Ulthran added 2 commits

December 1, 2023 01:08


          Not working, add heyfastq rule

ed6b0ef


          Working with heyfastq, not on PyPi yet

7b0b878

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Replace komplexity with heyfastq #426

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