Help with RDS files for early and late AD and error

[Chrisdoan9]

Hi swaruplabUCI,

This is the most well organized GitHub page of a paper I have ever seen. I try to run the file celltrek_parrallel.R but got this error.

ct_train <- CellTrek::traint(
  st_data=cur_vis,
  sc_data=cur_seurat,
  sc_assay='RNA',
  cell_names="cell_type"
)
Error in dimnames(x) <- dn : 
  length of 'dimnames' [1] not equal to array extent

I try to match the same gene length but still got the same error:

print(dim(cur_vis))
[1] 25536  3283
> print(dim(cur_seurat))
[1] 25536  8067

It seem I need to provide a path to a seurat object like vis_file = "/path/to/visium_seurat.rds". I looked on GEO GSE233208 but could not find RDS files for early and late AD. I saw RDS file for ADDS. Would you please have a look? Thank you so much!