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Add "otsu" method to GRABSEEDS #1071

Add "otsu" method to GRABSEEDS

Add "otsu" method to GRABSEEDS #1071

Workflow file for this run

name: build
on: [push, pull_request]
jobs:
build:
runs-on: ${{ matrix.os }}
strategy:
max-parallel: 4
matrix:
os: [ubuntu-latest, macos-13]
python-version: ["3.8", "3.10"]
steps:
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
cache: 'pip'
- name: Install BEDTools (Linux)
run: sudo apt-get install bedtools libmagickwand-dev
if: matrix.os == 'ubuntu-latest'
- name: Install BEDTools (macOS)
run: brew install bedtools freetype imagemagick
if: matrix.os == 'macos-13'
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install -e .
- name: Test with pytest
run: |
pip install PyYAML pytest pytest-cov pytest-benchmark mock
pytest --cov=jcvi tests