Add sam #1074
Workflow file for this run
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name: build | |
on: [push, pull_request] | |
jobs: | |
build: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
max-parallel: 4 | |
matrix: | |
os: [ubuntu-latest, macos-13] | |
python-version: ["3.8", "3.10"] | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
cache: 'pip' | |
- name: Install BEDTools (Linux) | |
run: sudo apt-get install bedtools libmagickwand-dev | |
if: matrix.os == 'ubuntu-latest' | |
- name: Install BEDTools (macOS) | |
run: brew install bedtools freetype imagemagick | |
if: matrix.os == 'macos-13' | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install -e . | |
- name: Test with pytest | |
run: | | |
pip install PyYAML pytest pytest-cov pytest-benchmark mock | |
pytest --cov=jcvi tests |