Deprecate graph.py

jcvi/graphics/base.py

@@ -420,14 +420,12 @@ def setup_theme(
     usetex: bool = True,
 ):
     try:
-        import seaborn as sns
-
         extra_rc = {
             "lines.linewidth": 1,
             "lines.markeredgewidth": 1,
             "patch.edgecolor": "k",
         }
-        sns.set(context=context, style=style, palette=palette, rc=extra_rc)
+        sns.set_theme(context=context, style=style, palette=palette, rc=extra_rc)
     except (ImportError, SyntaxError):
         pass
 

jcvi/projects/jcvi.py

@@ -0,0 +1,32 @@
+#!/usr/bin/env python
+# -*- coding: UTF-8 -*-
+
+"""
+Functions in this script produce figures in the JCVI manuscript.
+"""
+
+from ..apps.base import ActionDispatcher, OptionParser, logger
+
+
+def genomebuild(args):
+    """
+    %prog genomebuild
+
+    Plot genome build composite figure.
+    """
+    p = OptionParser(genomebuild.__doc__)
+    _, args, iopts = p.set_image_options(args, figsize="12x9")
+
+
+def main():
+
+    actions = (
+        ("genomebuild", "Plot genome build composite figure"),
+        ("diversity", "Plot diversity composite figure"),
+    )
+    p = ActionDispatcher(actions)
+    p.dispatch(globals())
+
+
+if __name__ == "__main__":
+    main()