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Fix None path (thanks @jailynai, #693)
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tanghaibao committed Jul 24, 2024
1 parent 0e61632 commit 683c3d9
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions jcvi/assembly/hic.py
Original file line number Diff line number Diff line change
Expand Up @@ -945,7 +945,6 @@ def bam2mat(args):
)
p.add_argument(
"--seqids",
default=None,
help="Use a given seqids file, a single line with seqids joined by comma",
)
opts, args = p.parse_args(args)
Expand All @@ -959,9 +958,10 @@ def bam2mat(args):
pf += f".resolution_{N}"
bins = 1500 # Distance distribution bins
minsize = 100 # Record distance if it is at least minsize
seqids = opts.seqids
seqids = (
open(opts.seqids).readline().strip().split(",")
if op.exists(opts.seqids)
open(seqids).readline().strip().split(",")
if seqids and op.exists(seqids)
else None
)

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