Add Won as an author

README.md

@@ -13,8 +13,8 @@ computation related to assembly, annotation, and comparative genomics.
 | ------- | ---------------------------------------------------------------- |
 | Authors | Haibao Tang ([tanghaibao](http://github.com/tanghaibao))         |
 |         | Vivek Krishnakumar ([vivekkrish](https://github.com/vivekkrish)) |
-|         | Jingping Li ([Jingping](https://github.com/Jingping))            |
 |         | Xingtan Zhang ([tangerzhang](https://github.com/tangerzhang))    |
+|         | Won Cheol Yim ([wyim-pgl](https://github.com/wyim-pgl))          |
 | Email   | <[email protected]>                                           |
 | License | [BSD](http://creativecommons.org/licenses/BSD/)                  |
 

jcvi/__init__.py

@@ -2,8 +2,13 @@
 from pkg_resources import get_distribution, DistributionNotFound
 
 
-__author__ = ("Haibao Tang", "Vivek Krishnakumar", "Jingping Li")
-__copyright__ = "Copyright (c) 2010-{}, Haibao Tang".format(datetime.now().year)
+__author__ = (
+    "Haibao Tang",
+    "Vivek Krishnakumar",
+    "Xingtan Zhang",
+    "Won Cheol Yim",
+)
+__copyright__ = f"Copyright (c) 2010-{datetime.now().year}, Haibao Tang"
 __email__ = "[email protected]"
 __license__ = "BSD"
 __status__ = "Development"
@@ -14,10 +19,10 @@
 except DistributionNotFound:  # pragma: no cover
     try:
         from .version import version as VERSION  # noqa
-    except ImportError:  # pragma: no cover
+    except ImportError as exc:  # pragma: no cover
         raise ImportError(
             "Failed to find (autogenerated) version.py. "
             "This might be because you are installing from GitHub's tarballs, "
             "use the PyPI ones."
-        )
+        ) from exc
 __version__ = VERSION

jcvi/apps/base.py

@@ -32,13 +32,13 @@
 from rich.console import Console
 from rich.logging import RichHandler
 
-from jcvi import __copyright__, __version__
+from .. import __copyright__, __version__ as version
 
 
 os.environ["LC_ALL"] = "C"
 # http://newbebweb.blogspot.com/2012/02/python-head-ioerror-errno-32-broken.html
 signal.signal(signal.SIGPIPE, signal.SIG_DFL)
-JCVIHELP = f"JCVI utility libraries {__version__} [{__copyright__}]\n"
+JCVIHELP = f"JCVI utility libraries {version} [{__copyright__}]\n"
 TextCollection = Union[str, List[str], Tuple[str, ...]]
 
 

jcvi/assembly/allmaps.py

@@ -7,21 +7,19 @@
 import os.path as op
 import os
 import sys
-import logging
-
-import numpy as np
-import networkx as nx
 
 from collections import Counter, defaultdict
 from functools import partial
 from itertools import combinations, product
 from typing import Optional
 
+import numpy as np
+import networkx as nx
+
 from cmmodule.utils import read_chain_file
 from cmmodule.mapbed import crossmap_bed_file
 from more_itertools import pairwise
 
-from jcvi import __version__ as version
 from ..algorithms.ec import GA_setup, GA_run
 from ..algorithms.formula import reject_outliers, spearmanr
 from ..algorithms.lis import (
@@ -41,6 +39,7 @@
     mkdir,
     need_update,
     sh,
+    version,
 )
 from ..formats.agp import AGP, order_to_agp, build as agp_build, reindex
 from ..formats.base import DictFile, FileMerger, must_open, read_block