Create deploy-app.yaml

.github/workflows/deploy-app.yaml

@@ -0,0 +1,65 @@
+---
+name: Deploy app
+
+on:
+  push:
+    branches:
+      - "main"
+  workflow_dispatch:
+
+permissions:
+  actions: write
+  checks: write
+  contents: write
+  deployments: write
+  id-token: write
+  issues: read
+  discussions: read
+  packages: write
+  pages: write
+  pull-requests: read
+  repository-projects: read
+  security-events: read
+  statuses: read
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: rstudio/shiny-workflows/setup-r-package@v1
+        with:
+          packages: |
+            renv
+            shinylive
+            sessioninfo
+            
+      - name: Install package
+        run: |
+          install.packages("tima", repos = c("https://taxonomicallyinformedannotation.r-universe.dev", "https://bioc.r-universe.dev", "https://cloud.r-project.org"))
+          tima::install()
+        shell: Rscript {0}
+
+      - name: Build site
+        shell: Rscript {0}
+        run: |
+          shinylive::export(system.file(package = "tima"), "site")
+
+      - name: Upload site artifact
+        if: github.ref == 'refs/heads/main'
+        uses: actions/upload-pages-artifact@v3
+        with:
+          path: "site"
+
+      - name: Deploy to GitHub pages 🚀
+        if: github.event_name != 'pull_request'
+        uses: JamesIves/[email protected]
+        with:
+          clean: false
+          branch: gh-pages
+          folder: site