update default gambit docker (#173)

* update default gambit docker * update md5sums
theiagen · Aug 28, 2023 · 19d1de4 · 19d1de4
1 parent 683c84c
commit 19d1de4
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Showing 3 changed files with 9 additions and 9 deletions.
diff --git a/tasks/taxon_id/task_gambit.wdl b/tasks/taxon_id/task_gambit.wdl
@@ -4,7 +4,7 @@ task gambit {
   input {
     File assembly
     String samplename
-    String docker = "us-docker.pkg.dev/general-theiagen/staphb/gambit:0.5.0"
+    String docker = "us-docker.pkg.dev/general-theiagen/staphb/gambit:1.0.0"
     File gambit_db_genomes = "gs://theiagen-public-files/terra/gambit_files/1.1.0/gambit-metadata-1.1-230417.gdb"
     File gambit_db_signatures = "gs://theiagen-public-files/terra/gambit_files/1.1.0/gambit-signatures-1.1-230417.gs"
     Int disk_size = 100

diff --git a/tests/workflows/theiaprok/test_wf_theiaprok_illumina_pe.yml b/tests/workflows/theiaprok/test_wf_theiaprok_illumina_pe.yml
@@ -221,7 +221,7 @@
     - path: miniwdl_run/call-clean_check_reads/work/_miniwdl_inputs/0/test_1.clean.fastq.gz
     - path: miniwdl_run/call-clean_check_reads/work/_miniwdl_inputs/0/test_2.clean.fastq.gz
     - path: miniwdl_run/call-gambit/command
-      md5sum: ee3f5f8694857e5de166a905b163e155
+      md5sum: eeec5cfb3590f2bea525d5eec943d440
     - path: miniwdl_run/call-gambit/inputs.json
       contains: ["assembly", "fasta", "samplename", "test"]
     - path: miniwdl_run/call-gambit/outputs.json
@@ -235,9 +235,9 @@
     - path: miniwdl_run/call-gambit/work/CLOSEST_DISTANCE
     - path: miniwdl_run/call-gambit/work/DATE
     - path: miniwdl_run/call-gambit/work/GAMBIT_DB_VERSION
-      md5sum: fcc8f3e34197b01a79929281c2bc93e6
+      md5sum: 9b822b93497f0e02e1ef00f60db5850e
     - path: miniwdl_run/call-gambit/work/GAMBIT_VERSION
-      md5sum: f04975119234de325222289d81748e6d
+      md5sum: 42a2713399a2aea74a7cb6889caf3fdb
     - path: miniwdl_run/call-gambit/work/MERLIN_TAG
       md5sum: d4cd0dabcf4caa22ad92fab40844c786
     - path: miniwdl_run/call-gambit/work/NEXT_TAXON
@@ -626,7 +626,7 @@
     - path: miniwdl_run/wdl/tasks/task_versioning.wdl
       md5sum: c178145bad99e3858a1327b3774177f3
     - path: miniwdl_run/wdl/tasks/taxon_id/task_gambit.wdl
-      md5sum: 21bf3c68afcc1c3bc8e70503d77911b7
+      md5sum: 08987d952c67c6ff6debf6898af15f9a
     - path: miniwdl_run/wdl/tasks/taxon_id/task_kraken2.wdl
       md5sum: f06823a409a087441c8e70e46f7dfc29
     - path: miniwdl_run/wdl/tasks/taxon_id/task_midas.wdl

diff --git a/tests/workflows/theiaprok/test_wf_theiaprok_illumina_se.yml b/tests/workflows/theiaprok/test_wf_theiaprok_illumina_se.yml
@@ -218,7 +218,7 @@
       md5sum: 32c0be4fb7f3030bf9c74c0a836d4f2e
     - path: miniwdl_run/call-clean_check_reads/work/_miniwdl_inputs/0/test_1.clean.fastq.gz
     - path: miniwdl_run/call-gambit/command
-      md5sum: ee3f5f8694857e5de166a905b163e155
+      md5sum: eeec5cfb3590f2bea525d5eec943d440
     - path: miniwdl_run/call-gambit/inputs.json
       contains: ["assembly", "fasta", "samplename", "test"]
     - path: miniwdl_run/call-gambit/outputs.json
@@ -232,9 +232,9 @@
     - path: miniwdl_run/call-gambit/work/CLOSEST_DISTANCE
     - path: miniwdl_run/call-gambit/work/DATE
     - path: miniwdl_run/call-gambit/work/GAMBIT_DB_VERSION
-      md5sum: fcc8f3e34197b01a79929281c2bc93e6
+      md5sum: 9b822b93497f0e02e1ef00f60db5850e
     - path: miniwdl_run/call-gambit/work/GAMBIT_VERSION
-      md5sum: f04975119234de325222289d81748e6d
+      md5sum: 42a2713399a2aea74a7cb6889caf3fdb
     - path: miniwdl_run/call-gambit/work/MERLIN_TAG
       md5sum: d4cd0dabcf4caa22ad92fab40844c786
     - path: miniwdl_run/call-gambit/work/NEXT_TAXON
@@ -594,7 +594,7 @@
     - path: miniwdl_run/wdl/tasks/task_versioning.wdl
       md5sum: c178145bad99e3858a1327b3774177f3
     - path: miniwdl_run/wdl/tasks/taxon_id/task_gambit.wdl
-      md5sum: 21bf3c68afcc1c3bc8e70503d77911b7
+      md5sum: 08987d952c67c6ff6debf6898af15f9a
     - path: miniwdl_run/wdl/tasks/taxon_id/task_kraken2.wdl
       md5sum: f06823a409a087441c8e70e46f7dfc29
     - path: miniwdl_run/wdl/tasks/taxon_id/task_midas.wdl