krakren -> kraken2

theiagen · Oct 25, 2024 · 4b6d267 · 4b6d267
1 parent bcddf62
commit 4b6d267
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Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/workflows/theiameta/wf_theiameta_illumina_pe.wdl b/workflows/theiameta/wf_theiameta_illumina_pe.wdl
@@ -45,10 +45,10 @@ workflow theiameta_illumina_pe {
         read1 = read1,
         read2 = read2,
         workflow_series = "theiameta",
-        kraken_db = kraken2_db,
-        call_kraken = false,
-        kraken_disk_size = 100,
-        kraken_memory = 8
+        kraken2_db = kraken2_db,
+        call_kraken2 = false,
+        kraken2_disk_size = 100,
+        kraken2_memory = 8
     }
   call kraken_task.kraken2_standalone as kraken2_clean {
     input:

diff --git a/workflows/theiaprok/wf_theiaprok_ont.wdl b/workflows/theiaprok/wf_theiaprok_ont.wdl
@@ -584,7 +584,7 @@ workflow theiaprok_ont {
     String? kraken2_version = read_qc_trim.kraken2_version
     String? kraken2_report = read_qc_trim.kraken2_report
     String? kraken2_database = read_qc_trim.kraken2_database
-    String? kraken_docker = read_qc_trim.kraken2_docker
+    String? kraken2_docker = read_qc_trim.kraken2_docker
     # Read QC - rasusa outputs
     String? rasusa_version = read_qc_trim.rasusa_version
     # Read QC - tiptoft outputs