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Add augur_iqtree_model_used variable to documentation for clarity
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Michal-Babins committed Nov 14, 2024
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2 changes: 1 addition & 1 deletion docs/workflows/phylogenetic_construction/augur.md
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Expand Up @@ -284,13 +284,13 @@ The Nextstrain team hosts documentation surrounding the Augur workflow → Auspi
| **Variable** | **Type** | **Description** |
| --- | --- | --- |
| aligned_fastas | File | A FASTA file of the aligned genomes |
| augur_iqtree_model_used | String | The iqtree model used during augur tree |
| augur_phb_analysis_date | String | The date the analysis was run |
| augur_phb_version | String | The version of the Public Health Bioinformatics (PHB) repository used |
| augur_version | String | Version of Augur used |
| auspice_input_json | File | JSON file used as input to Auspice |
| combined_assemblies | File | Concatenated FASTA file containing all samples |
| distance_tree | File | The distance tree created in Newick (.nwk) format |
| iqtree_model_used | String | The iqtree model used during augur tree |
| keep_list | File | A list of samples included in the phylogenetic tree |
| metadata_merged | File | Tab-delimited text file of the merged augur_metadata input files from all samples |
| snp_matrix | File | The SNP distance matrix for all samples used in the phylogenetic tree |
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