update default tbp-parser docker in docs

docs/workflows/genomic_characterization/theiaeuk.md

@@ -69,7 +69,7 @@ All input reads are processed through "core tasks" in each workflow. The core ta
 | merlin_magic | **staphopia_sccmec_docker_image** | String | Internal component, do not modify | us-docker.pkg.dev/general-theiagen/biocontainers/staphopia-sccmec:1.0.0--hdfd78af_0 | Do Not Modify, Optional |
 | merlin_magic | **tbp_parser_coverage_threshold** | Int | Internal component, do not modify | 100 | Do Not Modify, Optional |
 | merlin_magic | **tbp_parser_debug** | Boolean | Internal component, do not modify | FALSE | Do Not Modify, Optional |
-| merlin_magic | **tbp_parser_docker_image** | String | Internal component, do not modify | us-docker.pkg.dev/general-theiagen/theiagen/tbp-parser:1.3.6 | Do Not Modify, Optional |
+| merlin_magic | **tbp_parser_docker_image** | String | Internal component, do not modify | us-docker.pkg.dev/general-theiagen/theiagen/tbp-parser:2.2.2 | Do Not Modify, Optional |
 | merlin_magic | **tbp_parser_min_depth** | Int | Internal component, do not modify | 10 | Do Not Modify, Optional |
 | merlin_magic | **tbp_parser_operator** | String | Internal component, do not modify | "Operator not provided" | Do Not Modify, Optional |
 | merlin_magic | **tbp_parser_output_seq_method_type** | String | Internal component, do not modify | "WGS" | Do Not Modify, Optional |

docs/workflows/genomic_characterization/theiaprok.md

@@ -418,7 +418,7 @@ All input reads are processed through "[core tasks](#core-tasks-performed-for-al
 | merlin_magic | **tbp_parser_coverage_regions_bed** | File | A bed file that lists the regions to be considered for QC |  | Optional | FASTA, ONT, PE, SE |
 | merlin_magic | **tbp_parser_coverage_threshold** | Int | The minimum coverage for a region to pass QC in tbp_parser | 100 | Optional | FASTA, ONT, PE, SE |
 | merlin_magic | **tbp_parser_debug** | Boolean | Activate the debug mode on tbp_parser; increases logging outputs | TRUE | Optional | FASTA, ONT, PE, SE |
-| merlin_magic | **tbp_parser_docker_image** | String | The Docker container to use for the task | us-docker.pkg.dev/general-theiagen/theiagen/tbp-parser:2.1.1 | Optional | FASTA, ONT, PE, SE |
+| merlin_magic | **tbp_parser_docker_image** | String | The Docker container to use for the task | us-docker.pkg.dev/general-theiagen/theiagen/tbp-parser:2.2.2 | Optional | FASTA, ONT, PE, SE |
 | merlin_magic | **tbp_parser_etha237_frequency** | Float | Minimum frequency for a mutation in ethA at protein position 237 to pass QC in tbp-parser | 0.1 | Optional | FASTA, ONT, PE, SE |
 | merlin_magic | **tbp_parser_expert_rule_regions_bed** | File | A file that contains the regions where R mutations and expert rules are applied |  | Optional | FASTA, ONT, PE, SE |
 | merlin_magic | **tbp_parser_min_depth** | Int | Minimum depth for a variant to pass QC in tbp_parser | 10 | Optional | FASTA, ONT, PE, SE |

docs/workflows/standalone/tbprofiler_tngs.md

@@ -23,7 +23,7 @@ This workflow is still in experimental research stages. Documentation is minimal
 | tbp_parser | **coverage_threshold** | Int | The minimum percentage of a region to exceed the minimum depth for a region to pass QC in tbp_parser | 100 | Optional |
 | tbp_parser | **cpu** | Int | Number of CPUs to allocate to the task | 1 | Optional |
 | tbp_parser | **disk_size** | Int | Amount of storage (in GB) to allocate to the task | 100 | Optional |
-| tbp_parser | **docker** | String | The Docker container to use for the task | us-docker.pkg.dev/general-theiagen/theiagen/tbp-parser:2.1.1 | Optional |
+| tbp_parser | **docker** | String | The Docker container to use for the task | us-docker.pkg.dev/general-theiagen/theiagen/tbp-parser:2.2.2 | Optional |
 | tbp_parser | **etha237_frequency** | Float | Minimum frequency for a mutation in ethA at protein position 237 to pass QC in tbp-parser | 0.1 | Optional |
 | tbp_parser | **expert_rule_regions_bed** | File | A file that contains the regions where R mutations and expert rules are applied |  | Optional |
 | tbp_parser | **memory** | Int | Amount of memory/RAM (in GB) to allocate to the task | 4 | Optional |