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theiagen · Dec 4, 2024 · a76e500 · a76e500
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diff --git a/main/search/search_index.json b/main/search/search_index.json
diff --git a/main/workflows/genomic_characterization/theiacov/index.html b/main/workflows/genomic_characterization/theiacov/index.html
@@ -8318,6 +8318,7 @@ <h3 id="org-specific">Organism-specific parameters and logic<a class="headerlink
 <p>The following tables include the relevant organism-specific parameters; <strong>all of these default values can be overwritten by providing a value for the "Overwrite Variable Name" field</strong>.</p>
 <details class="toggle">
 <summary>SARS-CoV-2 Defaults</summary>
+<div class="searchable-table" markdown="block">
 <table>
 <thead>
 <tr>
@@ -8345,12 +8346,12 @@ <h3 id="org-specific">Organism-specific parameters and logic<a class="headerlink
 <tr>
 <td>nextclade_dataset_tag_input</td>
 <td>sars-cov-2</td>
-<td><code>"2024-07-17--12-57-03Z"</code></td>
+<td><code>"2024-11-19--14-18-53Z"</code></td>
 </tr>
 <tr>
 <td>pangolin_docker_image</td>
 <td>sars-cov-2</td>
-<td><code>"us-docker.pkg.dev/general-theiagen/staphb/pangolin:4.3.1-pdata-1.29 "</code></td>
+<td><code>"us-docker.pkg.dev/general-theiagen/staphb/pangolin:4.3.1-pdata-1.31 "</code></td>
 </tr>
 <tr>
 <td>reference_genome</td>
@@ -8374,9 +8375,11 @@ <h3 id="org-specific">Organism-specific parameters and logic<a class="headerlink
 </tr>
 </tbody>
 </table>
+</div>
 </details>
 <details class="toggle">
 <summary>Mpox Defaults</summary>
+<div class="searchable-table" markdown="block">
 <table>
 <thead>
 <tr>
@@ -8409,7 +8412,7 @@ <h3 id="org-specific">Organism-specific parameters and logic<a class="headerlink
 <tr>
 <td>nextclade_dataset_tag_input</td>
 <td>MPXV</td>
-<td><code>"2024-04-19--07-50-39Z"</code></td>
+<td><code>"2024-11-19--14-18-53Z"</code></td>
 </tr>
 <tr>
 <td>primer_bed_file</td>
@@ -8443,9 +8446,11 @@ <h3 id="org-specific">Organism-specific parameters and logic<a class="headerlink
 </tr>
 </tbody>
 </table>
+</div>
 </details>
 <details class="toggle">
 <summary>WNV Defaults</summary>
+<div class="searchable-table" markdown="block">
 <table>
 <thead>
 <tr>
@@ -8512,9 +8517,11 @@ <h3 id="org-specific">Organism-specific parameters and logic<a class="headerlink
 </tr>
 </tbody>
 </table>
+</div>
 </details>
 <details class="toggle">
 <summary>Flu Defaults</summary>
+<div class="searchable-table" markdown="block">
 <table>
 <thead>
 <tr>
@@ -8588,7 +8595,7 @@ <h3 id="org-specific">Organism-specific parameters and logic<a class="headerlink
 <td>flu</td>
 <td>ha</td>
 <td>h1n1</td>
-<td><code>"2024-07-03--08-29-55Z"</code></td>
+<td><code>"2024-11-27--02-51-00Z"</code></td>
 <td></td>
 </tr>
 <tr>
@@ -8612,7 +8619,7 @@ <h3 id="org-specific">Organism-specific parameters and logic<a class="headerlink
 <td>flu</td>
 <td>ha</td>
 <td>h3n2</td>
-<td><code>"2024-08-08--05-08-21Z"</code></td>
+<td><code>"2024-11-27--02-51-00Z"</code></td>
 <td></td>
 </tr>
 <tr>
@@ -8636,7 +8643,7 @@ <h3 id="org-specific">Organism-specific parameters and logic<a class="headerlink
 <td>flu</td>
 <td>ha</td>
 <td>victoria</td>
-<td><code>"2024-07-03--08-29-55Z"</code></td>
+<td><code>"2024-11-05--09-19-52Z"</code></td>
 <td></td>
 </tr>
 <tr>
@@ -8708,7 +8715,7 @@ <h3 id="org-specific">Organism-specific parameters and logic<a class="headerlink
 <td>flu</td>
 <td>na</td>
 <td>h1n1</td>
-<td><code>"2024-07-03--08-29-55Z"</code></td>
+<td><code>"2024-11-05--09-19-52Z"</code></td>
 <td></td>
 </tr>
 <tr>
@@ -8732,7 +8739,7 @@ <h3 id="org-specific">Organism-specific parameters and logic<a class="headerlink
 <td>flu</td>
 <td>na</td>
 <td>h3n2</td>
-<td><code>"2024-04-19--07-50-39Z"</code></td>
+<td><code>"2024-11-05--09-19-52Z"</code></td>
 <td></td>
 </tr>
 <tr>
@@ -8756,7 +8763,7 @@ <h3 id="org-specific">Organism-specific parameters and logic<a class="headerlink
 <td>flu</td>
 <td>na</td>
 <td>victoria</td>
-<td><code>"2024-04-19--07-50-39Z"</code></td>
+<td><code>"2024-11-05--09-19-52Z"</code></td>
 <td></td>
 </tr>
 <tr>
@@ -8793,9 +8800,11 @@ <h3 id="org-specific">Organism-specific parameters and logic<a class="headerlink
 </tr>
 </tbody>
 </table>
+</div>
 </details>
 <details class="toggle">
 <summary>RSV-A Defaults</summary>
+<div class="searchable-table" markdown="block">
 <table>
 <thead>
 <tr>
@@ -8823,7 +8832,7 @@ <h3 id="org-specific">Organism-specific parameters and logic<a class="headerlink
 <tr>
 <td>nextclade_dataset_tag_input</td>
 <td>rsv_a</td>
-<td>2024-08-01--22-31-31Z</td>
+<td>"2024-11-27--02-51-00Z"</td>
 </tr>
 <tr>
 <td>reference_genome</td>
@@ -8847,9 +8856,11 @@ <h3 id="org-specific">Organism-specific parameters and logic<a class="headerlink
 </tr>
 </tbody>
 </table>
+</div>
 </details>
 <details class="toggle">
 <summary>RSV-B Defaults</summary>
+<div class="searchable-table" markdown="block">
 <table>
 <thead>
 <tr>
@@ -8877,7 +8888,7 @@ <h3 id="org-specific">Organism-specific parameters and logic<a class="headerlink
 <tr>
 <td>nextclade_dataset_tag_input</td>
 <td>rsv_b</td>
-<td>"2024-08-01--22-31-31Z"</td>
+<td>"2024-11-27--02-51-00Z"</td>
 </tr>
 <tr>
 <td>reference_genome</td>
@@ -8901,9 +8912,11 @@ <h3 id="org-specific">Organism-specific parameters and logic<a class="headerlink
 </tr>
 </tbody>
 </table>
+</div>
 </details>
 <details class="toggle">
 <summary>HIV Defaults</summary>
+<div class="searchable-table" markdown="block">
 <table>
 <thead>
 <tr>
@@ -8970,6 +8983,7 @@ <h3 id="org-specific">Organism-specific parameters and logic<a class="headerlink
 </tr>
 </tbody>
 </table>
+</div>
 </details>
 </div>
 <h3 id="workflow-tasks">Workflow Tasks<a class="headerlink" href="#workflow-tasks" title="Permanent link">&para;</a></h3>