update clearlabs for statncov call

theiagen · Oct 21, 2024 · b790973 · b790973
1 parent e23b19a
commit b790973
Showing 1 changed file with 0 additions and 7 deletions.
diff --git a/workflows/theiacov/wf_theiacov_clearlabs.wdl b/workflows/theiacov/wf_theiacov_clearlabs.wdl
@@ -86,13 +86,6 @@ workflow theiacov_clearlabs {
       samplename = samplename,
       bamfile = consensus.sorted_bam
   }
-  # Use stats_n_coverage to calculate percentage_mapped_reads
-  call assembly_metrics.stats_n_coverage as stats_n_coverage {
-    input:
-      samplename = samplename,
-      bamfile = consensus.sorted_bam
-  }
-
   call consensus_qc_task.consensus_qc {
     input:
       assembly_fasta = consensus.consensus_seq,