update qc metrics combined so output is a tsv file anme in snippytree wf

theiagen · Oct 17, 2024 · d523f83 · d523f83
1 parent 74e733f
commit d523f83
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflows/phylogenetics/wf_snippy_tree.wdl b/workflows/phylogenetics/wf_snippy_tree.wdl
@@ -184,7 +184,7 @@ workflow snippy_tree_wf {
     call shared_variants_task.shared_variants {
       input:
         concatenated_variants = concatenate_variants.concatenated_variants, 
-        concatenated_file_name = tree_name_updated
+        concatenated_file_name = tree_name_updated + "_combined_qc_metrics.tsv",
     }
   }
   if (defined(snippy_variants_qc_metrics)) {