forgot to change output types

theiagen · Oct 21, 2024 · e4022ca · e4022ca
1 parent cc69a98
commit e4022ca
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/workflows/theiacov/wf_theiacov_ont.wdl b/workflows/theiacov/wf_theiacov_ont.wdl
@@ -291,13 +291,13 @@ workflow theiacov_ont {
     String? kraken2_target_organism_name = read_qc_trim.kraken2_target_organism_name
     # Read QC - kraken2 outputs raw
     Float? kraken2_human = read_qc_trim.kraken2_human
-    Float? kraken_sc2 = read_qc_trim.kraken2_sc2
+    String? kraken_sc2 = read_qc_trim.kraken2_sc2
     String? kraken2_target_organism = read_qc_trim.kraken2_target_organism
     File? kraken2_report = read_qc_trim.kraken2_report
     String? kraken2_database = read_qc_trim.kraken2_database
     # Read QC - kraken2 outputs dehosted
     Float? kraken2_human_dehosted = read_qc_trim.kraken2_human_dehosted
-    Float? kraken2_sc2_dehosted = read_qc_trim.kraken2_sc2_dehosted
+    String? kraken2_sc2_dehosted = read_qc_trim.kraken2_sc2_dehosted
     String? kraken2_target_organism_dehosted = read_qc_trim.kraken2_target_organism_dehosted
     File? kraken2_report_dehosted = read_qc_trim.kraken2_report_dehosted
     # Read Alignment - Artic consensus outputs