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docs: add version variables for fasttree, iqtree, and raxml in augur …
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Michal-Babins committed Dec 10, 2024
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Expand Up @@ -284,9 +284,12 @@ The Nextstrain team hosts documentation surrounding the Augur workflow → Auspi
| **Variable** | **Type** | **Description** |
| --- | --- | --- |
| aligned_fastas | File | A FASTA file of the aligned genomes |
| augur_fasttree_version | String | The fasttree version used |
| augur_iqtree_model_used | String | The iqtree model used during augur tree |
| augur_iqtree_version | String | The iqtree version used during augur tree |
| augur_phb_analysis_date | String | The date the analysis was run |
| augur_phb_version | String | The version of the Public Health Bioinformatics (PHB) repository used |
| augur_raxml_version | String | The version of raxml used during augur tree |
| augur_version | String | Version of Augur used |
| auspice_input_json | File | JSON file used as input to Auspice |
| combined_assemblies | File | Concatenated FASTA file containing all samples |
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