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[TheiaEuk] TheiaEuk ONT Workflow#644

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Michal-Babins wants to merge 13 commits intomaintheiagen/public_health_bioinformatics:mainfrom mb-theiaeuk-ont-devtheiagen/public_health_bioinformatics:mb-theiaeuk-ont-devCopy head branch name to clipboard

+312-68

Commits

Commits on Oct 7, 2024

• Initial commit for TheiaEuk ONT

  Michal-Babins

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  622be5e

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• Add specifics for description of cladetyper

  Michal-Babins

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  821b990

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• Added theiaeuk specific workflow_series logic to qc trim ont

  Michal-Babins

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  0dbc758

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• Added versioning capture

  Michal-Babins

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  63dcad3

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Commits on Oct 8, 2024

• Reordered logic for rasusa and nanoq

  Michal-Babins

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  6a45737

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• Removed options for merlin magic that should be hidden

  Michal-Babins

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  af72314

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• Reorder logic for snippy variant if tag is C.Auris

  Michal-Babins

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  4bd515d

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• Added read qc and assembly qc

  Michal-Babins

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  08a92fb

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• updated md5 sum

  Michal-Babins

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  5cc9407

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• Initial commits for theiaeuk CI

  Michal-Babins

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  021dbb7

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Commits on Oct 9, 2024

• Removed unecessary tests

  Michal-Babins

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  767f33a

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Commits on Oct 18, 2024

• Added ont support for A. fumigatus & C. neoformans

  Michal-Babins

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  d46d58f

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• updated md5 sum for merlin magic

  Michal-Babins

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  e23e9ab

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