[New Workflow] AMR-search for neisseria gonorrhoeae samples#743

Draft

fraser-combe wants to merge 14 commits intomainfrom fc-amr-search-dev

+226

Commits on Jan 27, 2025

amrsearch wdl and json parser
fraser-combe
committed

Commits on Jan 31, 2025

Commits on Feb 1, 2025

update NC output amrsearch
fraser-combe
committed

Commits on Feb 3, 2025

Commits on Feb 11, 2025

remove integration with TheiaProk and merlin_magic; just commented out for later integration
awh082834
committed

Commits on Feb 12, 2025

condense into one task; updated docker image, added python to image; made input_base more robust
awh082834
committed
Dockstore yml amrsearch inclusion
awh082834
committed

Commits on Feb 14, 2025

Commits on Feb 18, 2025

removal of parse_amr_json; no longer needed as script is within the image
awh082834
committed

Commits on Feb 19, 2025

minor documentation changes
awh082834
committed