[TheiaProk] improve export taxon table functionality

[sage-wright]

This PR closes #444

🗑️ This dev branch should be deleted after merging to main.

🧠 Summary

drastically reduce maintenance burden for export_taxon_table functionality
drastically reduce number of undesired optional inputs in terra for all theiaprok workflows

⚡ Impacted Workflows/Tasks

all theiaprok

This PR may lead to different results in pre-existing outputs: No

This PR uses an element that could cause duplicate runs to have different results: No

🛠️ Changes

i'm using a map to pass in the data and then parsing that map w/o hard-coding the various data so it's dope

⚙️ Algorithm

➡️ Inputs

lol all export_taxon_table inputs are now gone from terra except cpu, docker, disk_size, and memory as it should be

⬅️ Outputs

Nope

🧪 Testing

TheiaProk_FASTA - on full PE dataset except for samples w/o assemblies
TheiaProk_Illumina_PE - one of every species in the dataset
TheiaProk_Illumina_SE - on full SE dataset
TheiaProk_ONT - all data from dataset with read1

Suggested Scenarios for Reviewer to Test

🔬 Final Developer Checklist

• The workflow/task has been tested and results, including file contents, are as anticipated
• The CI/CD has been adjusted and tests are passing (Theiagen developers)
• Code changes follow the style guide
• Documentation and/or workflow diagrams have been updated if applicable
  • You have updated the "Last Known Changes" field for any affected workflows in the respective workflow documentation page and for every entry in the three workflows_overview tables to be the tag for the next upcoming release. If you do not know the tag, please put "vX.X.X"

🎯 Reviewer Checklist

• All changed results have been confirmed
• You have tested the PR appropriately (see the testing guide for more information)
• All code adheres to the style guide
• MD5 sums have been updated
• The PR author has addressed all comments
• The documentation has been updated

[xonq]

• TheiaProk FASTA validation
• TheiaProk PE validation
• TheiaProk SE validation
• TheiaProk ONT validation

[Michal-Babins]

Zach reviewed and tested the changes. I went through and confirmed Zach's test. Code changes and tests are good. Next step is for Zach to update his python script to serialize the wdl map of exon inputs.