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PHB-v0.1.0-theiaeuk-manuscript

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@michellescribner michellescribner released this 28 Mar 19:46
· 765 commits to main since this release
PHB-v0.1.0-theiaeuk-manuscript
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This release tags a version of the Public Health Bioinformatics repository for use in testing and validation of the following manuscript: "TheiaEuk: A Species-Agnostic Bioinformatics Workflow for Fungal Genomic Characterization".

This release is not intended for workflows other than TheiaEuk and should not be used for routine analysis.

Changes in this release:

  • Exposes runtime parameters for the the TheiaEuk, Nullarbor and MycoSNP workflows to allow apples-to-apples comparison
  • Updates fungal GAMBIT database files to v0.2 and updates the file locations to the rp bucket
  • Adds the product name for ERG11 to the resistance gene query because the "ERG11" gene name is not found in all reference genome files for Candida auris
  • Additionally updates have been made to the reference files used in the C. auris cladetyper task and the subsequent snippy task.
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