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theosanderson · Feb 22, 2023 · 31866c1 · 31866c1
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diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -0,0 +1,19 @@
+# See https://pre-commit.com for more information
+# See https://pre-commit.com/hooks.html for more hooks
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.3.0
+    hooks:
+      - id: trailing-whitespace
+      - id: end-of-file-fixer
+      - id: check-yaml
+      - id: check-added-large-files
+  - repo: https://github.com/pre-commit/mirrors-prettier
+    rev: "v2.7.1" # Use the sha / tag you want to point at
+    hooks:
+      - id: prettier
+  - repo: https://github.com/pre-commit/mirrors-yapf
+    rev: v0.32.0
+    hooks:
+      - id: yapf
+        additional_dependencies: [toml]
diff --git a/README.md b/README.md
@@ -4,10 +4,8 @@ A simple genome browser for smallish genomes (e.g. viruses and bacteria)
 
 ![image](https://user-images.githubusercontent.com/19732295/219011538-43b9b66b-0227-4171-87c6-08b496a7bf2e.png)
 
-
 ## https://gensplore.theo.io/
 
-
 ### Adding custom genomes
 
 For viewing a custom genome every now and then, just use the "Choose file" option. If you are doing this all the time you might want an easier method. Bacterial genomes load too slowly from NCBI for us to load them directly, but you can upload your own to a website that allows CORS access, then go to `http://gensplore.theo.io/?gb=http://mywebsite.com/myfile.gb`. If you have trouble with this feel free to raise an Issue and we may be able to add your genome.
diff --git a/postcss.config.js b/postcss.config.js
@@ -2,5 +2,5 @@ module.exports = {
   plugins: {
     tailwindcss: {},
     autoprefixer: {},
-  }
-}
+  },
+};
diff --git a/public/index.html b/public/index.html
@@ -5,31 +5,38 @@
     <link rel="icon" href="%PUBLIC_URL%/favicon.ico" />
     <meta name="viewport" content="width=device-width, initial-scale=1" />
     <meta name="theme-color" content="#000000" />
-    <meta
-      name="description"
-      content="Simple genbank viewer"
+    <meta name="description" content="Simple genbank viewer" />
+    <!-- HTML Meta Tags -->
+    <title>Gensplore</title>
+    <meta name="description" content="Simple genbank viewer" />
+    <script
+      async
+      src="https://www.googletagmanager.com/gtag/js?id=G-W3TJTHDBX3"
+    ></script>
+    <script>
+      function gtag() {
+        dataLayer.push(arguments);
+      }
+      (window.dataLayer = window.dataLayer || []),
+        gtag("js", new Date()),
+        gtag("config", "G-W3TJTHDBX3");
+    </script>
+    <!-- Facebook Meta Tags -->
+    <meta property="og:url" content="http://gensplore.theo.io" />
+    <meta property="og:type" content="website" />
+    <meta property="og:title" content="Gensplore" />
+    <meta property="og:description" content="Simple genbank viewer" />
+    <meta property="og:image" content="https://gensplore.theo.io/splash.png" />
 
-    />
-     <!-- HTML Meta Tags -->
-  <title>Gensplore</title>
-  <meta name="description" content="Simple genbank viewer">
-  <script async src="https://www.googletagmanager.com/gtag/js?id=G-W3TJTHDBX3"></script><script>function gtag(){dataLayer.push(arguments)}window.dataLayer=window.dataLayer||[],gtag("js",new Date),gtag("config","G-W3TJTHDBX3")</script>
-  <!-- Facebook Meta Tags -->
-  <meta property="og:url" content="http://gensplore.theo.io">
-  <meta property="og:type" content="website">
-  <meta property="og:title" content="Gensplore">
-  <meta property="og:description" content="Simple genbank viewer">
-  <meta property="og:image" content="https://gensplore.theo.io/splash.png">
+    <!-- Twitter Meta Tags -->
+    <meta name="twitter:card" content="summary_large_image" />
+    <meta property="twitter:domain" content="gensplore.theo.io" />
+    <meta property="twitter:url" content="https://gensplore.theo.io" />
+    <meta name="twitter:title" content="Gensplore" />
+    <meta name="twitter:description" content="Simple genbank viewer" />
+    <meta name="twitter:image" content="https://gensplore.theo.io/splash.png" />
 
-  <!-- Twitter Meta Tags -->
-  <meta name="twitter:card" content="summary_large_image">
-  <meta property="twitter:domain" content="gensplore.theo.io">
-  <meta property="twitter:url" content="https://gensplore.theo.io">
-  <meta name="twitter:title" content="Gensplore">
-  <meta name="twitter:description" content="Simple genbank viewer">
-  <meta name="twitter:image" content="https://gensplore.theo.io/splash.png">
-
-  <!-- Meta Tags Generated via https://www.opengraph.xyz -->
+    <!-- Meta Tags Generated via https://www.opengraph.xyz -->
     <link rel="apple-touch-icon" href="%PUBLIC_URL%/logo192.png" />
     <!--
       manifest.json provides metadata used when your web app is installed on a

diff --git a/public/sequence.gb b/public/sequence.gb
@@ -26,7 +26,7 @@ REFERENCE   2  (bases 1 to 29903)
   JOURNAL   Submitted (05-JAN-2020) Shanghai Public Health Clinical Center &
             School of Public Health, Fudan University, Shanghai, China
 COMMENT     On Jan 17, 2020 this sequence version replaced MN908947.2.
-            
+
             ##Assembly-Data-START##
             Assembly Method       :: Megahit v. V1.1.3
             Sequencing Technology :: Illumina
@@ -398,7 +398,7 @@ FEATURES             Location/Qualifiers
                      /product="2'-O-ribose methyltransferase"
                      /note="nsp16_OMT; 2'-o-MT; produced by pp1ab only"
                      /protein_id="YP_009725311.1"
-ORIGIN      
+ORIGIN
         1 attaaaggtt tataccttcc caggtaacaa accaaccaac tttcgatctc ttgtagatct
        61 gttctctaaa cgaactttaa aatctgtgtg gctgtcactc ggctgcatgc ttagtgcact
       121 cacgcagtat aattaataac taattactgt cgttgacagg acacgagtaa ctcgtctatc
@@ -899,4 +899,3 @@ ORIGIN
     29821 tttagtagtg ctatccccat gtgattttaa tagcttctta ggagaatgac aaaaaaaaaa
     29881 aaaaaaaaaa aaaaaaaaaa aaa
 //
-
diff --git a/public/sequence2.gb b/public/sequence2.gb
@@ -46,7 +46,7 @@ REFERENCE   5
             Medical Center Dr., Rockville, MD 20850, USA
 COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
             NCBI review. The reference sequence is identical to LN999946.
-            
+
             ##Genome-Annotation-Data-START##
             Annotation Provider :: INSDC submitter
             Annotation Status   :: Full annotation
@@ -27345,7 +27345,7 @@ FEATURES             Location/Qualifiers
                      pseudogene"
                      /pseudogene="unknown"
                      /db_xref="GeneID:812354"
-ORIGIN      
+ORIGIN
         1 tgaaccctaa accctaaacc ctaaacccta aacccctaaa ccctaaaccc tgaaccctaa
        61 accctaaacc ctaaacctaa accctaaacc ctaaaccctg aaccctaaac cctgaaccct
       121 aaacctaaac cctgaaccct aaaccctaaa ccctaaaccc taaaccctaa accctgaacc
@@ -82213,4 +82213,3 @@ ORIGIN
   3291841 gggtttaggg ttcagggttc agggtttagg gtttagggtt tagggtttca gggtttaggt
   3291901 ttagggttta gggtttaggg ttcagggttt agggtt
 //
-
diff --git a/src/App.css b/src/App.css
@@ -3,15 +3,14 @@
 @tailwind utilities;
 
 .stripybg {
-    width: 240px;
-    height: 240px;
-    background-color: #fff;
-    background-image: linear-gradient(0deg, transparent 99%, #eee 1%);
-    background-size: 60px 80px;
-    background-repeat: repeat;
-  }
+  width: 240px;
+  height: 240px;
+  background-color: #fff;
+  background-image: linear-gradient(0deg, transparent 99%, #eee 1%);
+  background-size: 60px 80px;
+  background-repeat: repeat;
+}
 
-.whitebg{
-    background-color: #fff;
-
-}
+.whitebg {
+  background-color: #fff;
+}