updates

taxonium_website/src/App.jsx

@@ -13,10 +13,10 @@ import treeConfig from './trees.json';
 
 // Hardcoded list of paths to show in the showcase
 const SHOWCASE_PATHS = [
-  "sars-cov-2/cov2tree",
-  "visual-tree-of-life",
-  "taxonomy",
-  "mpx"
+  "sars-cov-2/public",
+  "taxonomy/visual",
+  "taxonomy/full",
+  "mpox/public"
 ];
 
 function checkLegacyHostname() {

taxonium_website/src/trees.json

@@ -1,5 +1,5 @@
 {
-  "sars-cov-2/cov2tree": {
+  "sars-cov-2/public": {
     "backend": "https://api.cov2tree.org",
     "title": "SARS-CoV-2",
     "description": "All seven million public sequences of SARS-CoV-2 from the INSDC databases",
@@ -11,14 +11,14 @@
     "description": "SARS-CoV-2 sequences processed through Viridian pipeline",
     "legacyHostnames": ["viridian.taxonium.org"]
   },
-  "mpx": {
+  "mpox/public": {
     "protoUrl": "https://mpx-tree.vercel.app/mpx.jsonl.gz",
     "configUrl": "https://mpx-tree.vercel.app/config.json",
     "title": "Mpox",
     "description": "Mpox sequences from GenBank",
     "legacyHostnames": ["mpx.taxonium.org"]
   },
-  "taxonomy": {
+  "taxonomy/full": {
     "treeUrl": "https://cov2tree.nyc3.digitaloceanspaces.com/ncbi/tree.nwk.gz",
     "metaUrl": "https://cov2tree.nyc3.digitaloceanspaces.com/ncbi/metadata.tsv.gz",
     "configUrl": "https://cov2tree.nyc3.digitaloceanspaces.com/ncbi/config.json",
@@ -27,7 +27,7 @@
     "description": "Full 2.2M NCBI Taxonomy of species",
     "legacyHostnames": ["taxonomy.taxonium.org"]
   },
-  "visual-tree-of-life": {
+  "taxonomy/visual": {
     "protoUrl": "https://cov2tree.nyc3.digitaloceanspaces.com/wikidata/out.jsonl.gz",
     "title": "Wikidata visual tree of life",
     "description": "The tree of life, showing species from Wikidata with images. Links to Wikipedia.",