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taxonium_component/src/README.md

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+src/Taxonium.jsx: This is the main entry point for the Taxonium component. It brings together all the hooks and components to render the interactive phylogenetic tree.
+
+src/Deck.jsx: This component renders the actual DeckGL canvas and handles interactions with it. It contains the layers for nodes, lines, labels, etc.
+
+src/hooks: This folder contains all the React hooks used in the project. Some of the main hooks are:
+
+- useBackend: This hook is used to interface with either a local or server backend to get data and search 
+- useColor, useColorBy: These hooks handle the node coloring logic
+- useConfig: This hook is used to get configuration information (title, source, etc)
+- useGetDynamicData: This hook is used to get data from the backend within the current viewport
+- useLayers: This hook generates the DeckGL layers 
+- useNodeDetails: This hook is used to get details for selected nodes
+- useSearch: This hook handles searching the tree
+- useView: This hook manages the view state and zooming/panning
+- useHoverDetails: This hook manages hovered node details
+
+src/utils: This folder contains various utility functions, including:
+
+- processNewick.js: For converting Newick/Nexus into Taxonium JSON format
+- processNextstrain.js: For converting Nextstrain JSON into Taxonium JSON format 
+- searchUtil.js: Contains utility functions for searching 
+- formatNumber.js: Used to format large numbers with commas