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Etn/get settings and events#44

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ed-nykaza wants to merge 78 commits intomastertidepool-org/data-analytics:masterfrom etn/get-settings-and-eventstidepool-org/data-analytics:etn/get-settings-and-eventsCopy head branch name to clipboard

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Commits

Commits on Jan 11, 2019

• update gitignore

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  917d739

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• initial commit

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  f295c17

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• add ISF and CIR

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• update to rounded time for tidal data analytics python tools

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• add bolus events

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• flatten embedded json to cover all column headings

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• update bolus events to include isf and cir associated with events

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• get ISF from pump settings

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• get CIR from the pump settings

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• add the correction target from the pump settings

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• clean up unused pieces of code

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• add logic for missing data

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Commits on Jan 12, 2019

• get actual basal rates and scheduled basal rates

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• changes related to time

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• expand correction target cases and auto mode basal rates

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• handle insulinSensitivities and carbRatios schedules

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• refactor correction target

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• handle multiple correctionTargets

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• add cgm data

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• make an actual basal rate delivered df

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• add in extended boluses to the actual basals delivered

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• get day level summary stats by age and years living with (ylw)

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• require pump and cgm data for this analysis

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• remove dependence on tidals

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• edge case where the active schedule is a float (convert back to string)

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• save all preprocessed data

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Commits on Jan 13, 2019

• calc local time and save settings and events

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• add isf day stats

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• calculate day summaries for settings (isf, cir, ct, and sbr)

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• day summaries only include summary stats

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• get settings summaries across for each age and ylw

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Commits on Jan 14, 2019

• fix edge case 'US/Pacific-New'

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  fc4a253

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• fix scheduled isf and cir

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• fix correction target age summaries to include min, wMean, and max

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• add insulin/carb events and basic cgm stats

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• add argparse to run from commandline

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• add try catch to help batch process

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Commits on Jan 16, 2019

• update flatten_json to include a list of fields to NOT flatten

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Commits on Jan 17, 2019

• syntax of new flatten_json function

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Commits on Jan 18, 2019

• setting summaries per day should only have one entry per day

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• get rid of break

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• add deviceId to correction target data

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• fix correction target to match how pumps set correction target

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• only check deviceId if payload exists

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• add age and years with summaries, and save all data

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Commits on Jan 22, 2019

• get rid of print correction target

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• ignore copy of slice warning

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• sense units of isf

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• make sure n670g days returns 0 instead of False when no data

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• allow for valid cgm to account for free style 15 minute data interval

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• comment out breakpoints (for now while developing)

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• make sure nDays with closed loop data is 0 and not False

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Commits on Jan 23, 2019

• deal with edge case where schedule has no information

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• deal with edge case where there is not enough pump and/or cgm data

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• edge case where active schedule is null

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Commits on Jan 24, 2019

• rename schedule basal rate summary data columns

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• update to the todo list at end of file

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• add to list of issues to investigate

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• adding to list of potential issues to examine

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Commits on Jan 29, 2019

• changing a day to reflect local time

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• add total daily dose and correct basals that extend past midnight

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Commits on Jan 30, 2019

• add cgm and episode stats

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  99c0de7

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• fix return typo

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• turn the try-except back on for run on AWS

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• remove input argument bypass

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Commits on Jan 31, 2019

• gather and combine files for analysis

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• pumpEvents no longer exists, change to basal and bolus Events

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• add dayData back to output

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Commits on Feb 8, 2019

• update packages to include allow static figure recreate with plotly

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Commits on Feb 13, 2019

• add a work in progress (wip) to gitignore

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Commits on May 20, 2019

• code used to generate summary tables

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• exclude parser output in gitignore

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Commits on May 23, 2019

• change location of data path and file name

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• change figure output path

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Commits on May 24, 2019

• ignore local plotly plot

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• plots of isf and tdd (local only)

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Commits on May 28, 2019

• update environment

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Commits on May 29, 2019

• plots using jos age and ylw groups

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