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Remove PyVCF dependency #19

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Remove PyVCF dependency #19

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kkchau
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@kkchau kkchau commented Apr 3, 2024

Replace PyVCF, which has been abandoned for years now and can be buggy, with pysam, which offers stricter VCF parsing rules.

Replace PyVCF, which has been abandoned for years now, with pysam, which
offers stricter VCF parsing rules.
@kkchau kkchau marked this pull request as ready for review April 3, 2024 23:14
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kkchau commented May 30, 2024

@tkzeng would you be able to review? This should resolve some issues with installing the program

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