Identification of differential RNA modifications from nanopore direct RNA sequencing

RNA modifications detection from Nanopore dRNA-Seq data

An awesome Oxford Nanopore Pipeline for direct RNA-sequencing

NanoML-5moU: A Machine Learning framework to detect 5mou modification in IVT direct RNA sequencing data

Repository for the R package RNAModR

Convert mpileup format to base count tsv table

Nanopore direct tRNA sequencing method refinement and RNA modification benchmarking

Annotates modomics RNA sequences for easy viewing of RNA modifications and nucleotide positions.

handful of tools that might be needed before or after HAMR

A multiomics approach reveals RNA dynamics promote cellular sensitivity to DNA hypomethylation

📦 Modstrings: implementation of Biostrings to work with nucleotide sequences containing modified nucleotides.

A bundle of HAMRtools for High-throughput RNA modification prediction and analysis