Open Malaria

master builds:

develop builds:

License: GPL v2 (see COPYING).

Build instructions:

mkdir build && cd build
ccmake ..
Press 'c', look over options, press 'c' again and 'g'
make -j4
ctest -j4

For testing and development, ideally use debug builds (which enable some asserts to do with simulation time usage).

For further documentation, see the wiki: https://github.com/SwissTPH/openmalaria/wiki

Code subdirs:

• contrib/

  • Third-party libraries, distributed under the same repo for convenience.

• include/

  • Header files associated with model. (only in old Versions, changed in this commit)

• model/

  • Source code for the malaria model.

• test/

  • High-level testing: test scenarios with expected outputs. Also run-time files: densities.csv, scenario_?.xsd, Nv0scenario*.txt.

• unittest/

  • Low-level testing: unittests for the model using cxxunit.

• util/

  • Extra scripts associated with OpenMalaria.

Scenario schema files (see schema/policy.txt for details):

• schema/scenario.xsd :
  • The latest (partial) schema file.
• schema/entomology.xsd, schema/demography.xsd, etc :
  • components of the latest schema, included from scenario.xsd.
• schema/scenario_*.xsd :
  • Copies of released schema versions, with all components inlined in the same file.