Removing hard limit on current downloads and documentation wording im…

…provements (#203)

* removing hard cap on file size of current downloads.  this is slower, but safer going forward

* better wording in documentation

* other place there was a hard cap

R/load_taxonomic_resources.R

@@ -337,7 +337,6 @@ dataset_access_function <-
       tryCatch({
         APC <- readr::read_csv(
           "https://biodiversity.org.au/nsl/services/export/taxonCsv",
-          n_max = 110000,
           col_types =
             readr::cols(
               .default = readr::col_character(),
@@ -351,7 +350,6 @@ dataset_access_function <-
         APNI <-
           readr::read_csv(
             "https://biodiversity.org.au/nsl/services/export/namesCsv",
-            n_max = 140000,
             col_types =
               readr::cols(
                 .default = readr::col_character(),

R/native_anywhere_in_australia.R

@@ -1,10 +1,11 @@
 #' For a vector of taxon names in to the APC, check if the species are native anywhere in Australia
 #'
-#' This function checks if the given species is native anywhere in Australia according to the APC. 
-#' Note that this will not detect within-Australia introductions, e.g. if a species is from Western Australia and is invasive on the east coast.
-#' And recent invasions are unlikely to be documented yet in APC. 
+#' This function checks which species from a list is thought to be native anywhere in Australia according to the APC. 
+#' Important caveats: this will not detect within-Australia introductions, e.g. if a species is from Western Australia and is invasive on the east coast.
+#' Also, very recent invasions are unlikely to be documented yet in APC. 
+#' Ideally check spelling and taxonomy updates first via \link{create_taxonomic_update_lookup}.
 #' For the complete matrix of species by states that also represents within-Australia invasions,
-#' use \link{create_species_state_origin_matrix}.  For spelling checks and taxonomy updates please see \link{create_taxonomic_update_lookup}.
+#' use \link{create_species_state_origin_matrix}.  
 #'
 #' @family diversity methods
 #' @param species A character string typically representing the binomial for the species.  

R/release.R

@@ -23,7 +23,6 @@ download_taxonomic_resources_for_release<- function(version_name = NULL, path =
  APC <-
    readr::read_csv(
           "https://biodiversity.org.au/nsl/services/export/taxonCsv",
-          n_max = 110000,
           col_types =
             readr::cols(
               .default = readr::col_character(),
@@ -43,7 +42,6 @@ readr::write_csv(APC, file = paste0(path,"apc.tar.gz"))
  APNI <-
    readr::read_csv(
      "https://biodiversity.org.au/nsl/services/export/namesCsv",
-     n_max = 140000,
      col_types =
        readr::cols(
          .default = readr::col_character(),