Use traits build (#770)

*  swap to using the traits.build package to build austraits.build
* move script with functions used in custom_R_code - it was scripts/custom.R; now R/custom_R_code.R
*  edits to metadata files to switch method_id to method_context_id & add proper method_id
---------
Co-authored-by: Elizabeth Wenk <[email protected]>
Co-authored-by: Sophie Yang <[email protected]>
Co-authored-by: yangsophieee <[email protected]>

.github/workflows/check-build.yml

@@ -32,15 +32,15 @@ jobs:
 
       - name: check sources
         run: |
-          library(austraits.build)
-          source("scripts/custom.R")
+          library(traits.build)
+          source("R/custom_R_code.R")
           dataset_test(dir("data"))
         shell: Rscript {0}
 
       - name: build austraits
         run: |
-          library(austraits.build)
-          source("scripts/custom.R")
+          library(traits.build)
+          source("R/custom_R_code.R")
           remake::make()
         shell: Rscript {0}
 

DESCRIPTION

@@ -1,13 +1,12 @@
-Type: Package
+Type: Compendium
 Package: austraits.build
-Title: Package used to build an AusTraits data resource
+Title: Reprository used to build an AusTraits data resource
 Version: 0.9.0
 Maintainer: Daniel Falster <[email protected]>
 Authors@R: c(
     person(given = "Daniel", family = "Falster", role = c("cre", "aut"), email = "[email protected]", comment = c(ORCID = "0000-0002-9814-092X")),
     person(given = "Elizabeth", family = "Wenk", role = c("cur", "aut"),  comment = c(ORCID = "0000-0001-5640-5910")),
     person(given = "Rachael", family = "Gallagher", role = c("aut", "cur"), comment = c(ORCID = "0000-0002-4680-8115")),
-    person(given = "Gary", family = "Truong", role = c("ctb")),
     person(given = "Stuart", family = "Allen", role = c("ctb")),
     person("ARDC", role = c("fnd")),
     person("ARC", role = c("fnd"))
@@ -17,43 +16,20 @@ BugReports: https://github.com/traitecoevo/austraits.build/issues
 URL: http://traitecoevo.github.io/austraits.build/
 License: BSD_2_clause + file LICENCE
 Depends:
-    R (>= 3.6.0),
+    R (>= 4.2.0),
     base,
+    traits.build,
     dplyr,
     lubridate,
-    readr,
-    stringr,
-    tidyr
+    stringr
 Imports:
     crayon,
     git2r,
-    kableExtra,
-    magrittr,
-    purrr,
-    RefManageR,
-    remake,
-    rlang,
-    rmarkdown,
-    stringi,
-    styler,
-    testthat,
-    tibble,
-    whisker,
-    yaml
+    remake
 Suggests:
     austraits,
-    leaflet,
-    bibtex,
-    knitr,
-    bench,
-    devtools,
-    markdown,
-    rprojroot,
-    pkgdown,
-    rcrossref,
-    zip,
-    covr
 Remotes:
+    traitecoevo/traits.build@develop,
     traitecoevo/austraits@develop,
     richfitz/remake
 Encoding: UTF-8