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Added dividers
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fontikar committed Dec 10, 2024
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7 changes: 7 additions & 0 deletions index.css
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filter: none; /* Removes grayscale on hover */
transform: scale(1.1); /* Slightly enlarges the logo */
}

.divider {
border: none;
height: 3px;
background: linear-gradient(to right, #4caf50, #2196f3);
margin: 50px 0; /* Adds 50px space above and below */
}
22 changes: 18 additions & 4 deletions index.qmd
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title: ""
format:
html:
toc: FALSE
toc: TRUE
include-after-body: _footer.html
css: index.css
lightbox: true
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Learn more on how you can [collaborate and contribute](contributors.qmd) to AusTraits
:::

<div class="divider"></div>

### Access and Usage

![](images/AusTraitsflowchart20221108.svg)
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The element definitions contains definitions for each trait and trait value (range of numeric values or list of categorical values) allowable in AusTraits. The trait concepts used by AusTraits are published in the **[AusTraits Plant Dictionary](https://w3id.org/APD)**.

<div class="divider"></div>

### Software and Outputs

<br>

#### traits.build: a data model, workflow and R package for building harmonised ecological trait databases


Expand All @@ -71,17 +77,22 @@ In addition to AusTraits, two other trait databases for disparate traits and tax

A description of the traits.build data model, workflow and R package was published as a data paper in Ecological Informatics in August 2024 and is available at: **[doi: 10.1016/j.ecoinf.2024.102773](https://doi.org/10.1016/j.ecoinf.2024.102773)**.

<br>

#### austraits: the R interface to the AusTraits database

::: {.img-float}
<a href="https://github.com/traitecoevo/austraits">
![](images/austraits_hex.png){width=30% style="float: left; margin: 50px;"}
![](images/austraits_hex.png){width=30% style="float: left; margin: 40px;"}
</a>
:::

<br>

austraits allow users to access, explore and wrangle data from traits.build relational databases. It is also an R interface to AusTraits, the Australian plant trait database. This package contains functions for joining data from various tables, filtering to specific records, combining multiple databases and visualising the distribution of the data. We expect this package will assist users in working with traits.build databases.

<br><br><br>

#### APCalign: an R package for aligning and updating names of Australian vascular plants

::: {.img-float}
Expand All @@ -96,6 +107,8 @@ The R code used by AusTraits to align names with the APC and APNI has been gener

A description of the APCalign R package was published in the Australian Journal of Botany in May 2024 and is available at: **[doi: 10.1071/BT24014](https://doi.org/10.1071/BT24014)**.

<br>

#### The AusTraits Plant Dictionary (APD)


Expand All @@ -111,6 +124,8 @@ The AusTraits team held a series of **[workshops](post/workshop1/)** from 2021-2

The APD was published as a data paper in Scientific Data in May 2024 and is available at: **[doi: 10.1038/s41597-024-03368-z](https://doi.org/10.1038/s41597-024-03368-z)**.

<br>

#### Transforming taxonomic descriptions into trait data tables

Taxonomic descriptions for most of Australia's 30,000+ plant species are available in online floras maintained by state and national herbaria. One of our initiatives has been to use algorithms to extract key trait data from these paragraphs of information, providing an easy-to-search, tabular formulation of the taxonomic descriptions. This effort has led to the extraction of 570,000 distinct trait values across 36 traits. These data are available in AusTraits and the method used is described in **[Coleman et al. 2023](https://doi.org/10.1016/j.ecoinf.2023.102312)**.
Expand All @@ -119,8 +134,7 @@ For three traits, **[life history](https://w3id.org/APD/traits/trait_0030012)**,





<div class="divider"></div>

### Ongoing Efforts

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