Update Michael's affiliation to U of Augsburg (#126) #421
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths-ignore: | |
| - 'LICENSE.md' | |
| - 'README.md' | |
| - '.github/workflows/CompatHelper.yml' | |
| - '.github/workflows/DocPreviewCleanup.yml' | |
| - '.github/workflows/TagBot.yml' | |
| pull_request: | |
| paths-ignore: | |
| - 'LICENSE.md' | |
| - 'README.md' | |
| - '.github/workflows/CompatHelper.yml' | |
| - '.github/workflows/DocPreviewCleanup.yml' | |
| - '.github/workflows/TagBot.yml' | |
| workflow_dispatch: | |
| # Cancel redundant CI tests automatically | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| test: | |
| if: "!contains(github.event.head_commit.message, 'skip ci')" | |
| name: ${{ matrix.os }} - ${{ matrix.JULIA_P4EST_TEST }} - Julia ${{ matrix.version }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| version: | |
| - '1.6' | |
| - '1' | |
| # - 'nightly' | |
| os: | |
| - ubuntu-latest | |
| - macos-latest | |
| - windows-latest | |
| arch: | |
| - x64 | |
| JULIA_P4EST_TEST: | |
| - P4EST_JLL_MPI_DEFAULT | |
| - P4EST_CUSTOM_MPI_CUSTOM | |
| exclude: | |
| # Some preferences are not loaded in package tests in older versions | |
| # of Julia, see | |
| # https://github.com/JuliaPackaging/Preferences.jl/issues/40 | |
| # Thus, we need to disable this setup in CI. | |
| - version: '1.6' | |
| JULIA_P4EST_TEST: P4EST_CUSTOM_MPI_CUSTOM | |
| # Run only selected tests on macOS and Windows, since not everything | |
| # works everywhere yet and we are most familiar with setting up custom | |
| # p4est and MPI builds on Linux. | |
| - os: macos-latest | |
| JULIA_P4EST_TEST: P4EST_CUSTOM_MPI_CUSTOM | |
| - os: windows-latest | |
| JULIA_P4EST_TEST: P4EST_CUSTOM_MPI_CUSTOM | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set p4est release to run tests against | |
| # We use an older release of `p4est` on purpose than the version | |
| # provided by P4est_jll.jl to check whether everything still works | |
| # in another version of `p4est` than the version used to generate the | |
| # bindings. | |
| run: | | |
| P4EST_RELEASE=2.3.1 | |
| echo "P4EST_RELEASE=$P4EST_RELEASE" >> $GITHUB_ENV | |
| echo "P4EST_RELEASE=$P4EST_RELEASE" | |
| shell: bash | |
| - name: Set environment variables | |
| run: | | |
| echo "Setting variables for '${{ matrix.JULIA_P4EST_TEST }}'..." | |
| echo "JULIA_P4EST_TEST=${{ matrix.JULIA_P4EST_TEST }}" >> $GITHUB_ENV | |
| echo "JULIA_P4EST_TEST=${{ matrix.JULIA_P4EST_TEST }}" | |
| if [[ ${{ matrix.JULIA_P4EST_TEST }} == "P4EST_JLL_MPI_DEFAULT" ]] | |
| then | |
| echo "(no additional environment variables required)" | |
| elif [[ ${{ matrix.JULIA_P4EST_TEST }} == "P4EST_CUSTOM_MPI_CUSTOM" ]] | |
| then | |
| P4EST_TMP=`pwd`/libp4est_tmp | |
| echo "P4EST_TMP=$P4EST_TMP" >> $GITHUB_ENV | |
| echo "P4EST_TMP=$P4EST_TMP" | |
| echo "JULIA_P4EST_TEST_LIBP4EST=$P4EST_TMP/prefix/lib/libp4est.so" >> $GITHUB_ENV | |
| echo "$JULIA_P4EST_TEST_LIBP4EST=$P4EST_TMP/prefix/lib/libp4est.so" | |
| echo "JULIA_P4EST_TEST_LIBSC=$P4EST_TMP/prefix/lib/libsc.so" >> $GITHUB_ENV | |
| echo "$JULIA_P4EST_TEST_LIBSC=$P4EST_TMP/prefix/lib/libsc.so" | |
| else | |
| echo "ERROR: unknown test type ${{ matrix.JULIA_P4EST_TEST }}" >&2 | |
| exit 1 | |
| fi | |
| echo "Done." | |
| shell: bash | |
| - uses: julia-actions/setup-julia@v2 | |
| with: | |
| version: ${{ matrix.version }} | |
| arch: ${{ matrix.arch }} | |
| show-versioninfo: true | |
| - uses: julia-actions/cache@v2 | |
| - name: Install custom MPI library for testing | |
| run: | | |
| if [[ ${{ matrix.JULIA_P4EST_TEST }} == "P4EST_CUSTOM_MPI_CUSTOM" ]] | |
| then | |
| sudo apt-get install -y openmpi-bin libopenmpi-dev | |
| fi | |
| shell: bash | |
| - name: Install custom p4est library for testing | |
| run: | | |
| ./.ci_install_p4est.sh | |
| shell: bash | |
| - name: Configure MPI.jl | |
| shell: julia --color=yes {0} | |
| run: | | |
| @show pwd() | |
| include(joinpath(pwd(), "test", "configure_packages.jl")) | |
| - uses: julia-actions/julia-buildpkg@v1 | |
| env: | |
| PYTHON: "" | |
| - uses: julia-actions/julia-runtest@v1 | |
| env: | |
| PYTHON: "" | |
| - uses: julia-actions/julia-processcoverage@v1 | |
| - uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: ./lcov.info # optional | |
| flags: unittests # optional | |
| name: codecov-umbrella # optional | |
| fail_ci_if_error: true # optional (default = false) | |
| # verbose: true # optional (default = false) | |
| # The standard setup of Coveralls is just annoying for parallel builds, see, e.g., | |
| # https://github.com/trixi-framework/Trixi.jl/issues/691 | |
| # https://github.com/coverallsapp/github-action/issues/47 | |
| # https://github.com/coverallsapp/github-action/issues/67 | |
| # This standard setup is reproduced below for completeness. | |
| # - uses: coverallsapp/github-action@master | |
| # with: | |
| # github-token: ${{ secrets.GITHUB_TOKEN }} | |
| # flag-name: run-${{ matrix.JULIA_P4EST_TEST }}-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.arch }}-${{ github.run_id }} | |
| # parallel: true | |
| # path-to-lcov: ./lcov.info | |
| # Instead, we use a more tedious approach: | |
| # - Store all individual coverage files as artifacts (directly below) | |
| # - Download and merge individual coverage reports in another step | |
| # - Upload only the merged coverage report to Coveralls | |
| - shell: bash | |
| run: | | |
| cp ./lcov.info ./lcov-${{ matrix.JULIA_P4EST_TEST }}-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.arch }}.info | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: lcov-${{ matrix.JULIA_P4EST_TEST }}-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.arch }} | |
| path: ./lcov-${{ matrix.JULIA_P4EST_TEST }}-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.arch }}.info | |
| finish: | |
| needs: test | |
| runs-on: ubuntu-latest | |
| steps: | |
| # The standard setup of Coveralls is just annoying for parallel builds, see, e.g., | |
| # https://github.com/trixi-framework/Trixi.jl/issues/691 | |
| # https://github.com/coverallsapp/github-action/issues/47 | |
| # https://github.com/coverallsapp/github-action/issues/67 | |
| # This standard setup is reproduced below for completeness. | |
| # - name: Coveralls Finished | |
| # uses: coverallsapp/github-action@master | |
| # with: | |
| # github-token: ${{ secrets.GITHUB_TOKEN }} | |
| # parallel-finished: true | |
| # Instead, we use the more tedious approach described above. | |
| # At first, we check out the repository and download all artifacts | |
| # (and list files for debugging). | |
| - uses: actions/checkout@v4 | |
| - uses: actions/download-artifact@v4 | |
| - run: ls -R | |
| # Next, we merge the individual coverage files and upload | |
| # the combined results to Coveralls. | |
| - name: Merge lcov files using Coverage.jl | |
| shell: julia --color=yes {0} | |
| run: | | |
| using Pkg | |
| Pkg.activate(temp=true) | |
| Pkg.add("Coverage") | |
| using Coverage | |
| coverage = LCOV.readfolder(".") | |
| for cov in coverage | |
| cov.filename = replace(cov.filename, "\\" => "/") | |
| end | |
| coverage = merge_coverage_counts(coverage) | |
| @show covered_lines, total_lines = get_summary(coverage) | |
| LCOV.writefile("./lcov.info", coverage) | |
| - uses: coverallsapp/github-action@v2 | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| path-to-lcov: ./lcov.info | |
| # Upload merged coverage data as artifact for debugging | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: lcov | |
| path: ./lcov.info | |
| # That's it | |
| - run: echo "Finished testing P4est" |