Merge branch 'main' into subcell-limiting-parallel-bounds-check

.github/workflows/Documenter.yml

@@ -38,6 +38,7 @@ jobs:
         with:
           version: '1.9'
           show-versioninfo: true
+      - uses: julia-actions/cache@v1
       - uses: julia-actions/julia-buildpkg@v1
         env:
           PYTHON: ""

.github/workflows/ci.yml

@@ -70,6 +70,7 @@ jobs:
           - p4est_part1
           - p4est_part2
           - t8code_part1
+          - t8code_part2
           - unstructured_dgmulti
           - parabolic
           - paper_self_gravitating_gas_dynamics

.gitignore

@@ -10,6 +10,7 @@
 *.mesh
 *.bson
 *.inp
+*.msh
 **/Manifest.toml
 out*/
 docs/build

NEWS.md

@@ -9,6 +9,8 @@ for human readability.
 #### Added
 - AMR for hyperbolic-parabolic equations on 3D `P4estMesh`
 - `flux_hllc` on non-cartesian meshes for `CompressibleEulerEquations{2,3}D`
+- Different boundary conditions for quad/hex meshes in Abaqus format, even if not generated by HOHQMesh, 
+  can now be digested by Trixi in 2D and 3D.
 
 ## Changes when updating to v0.6 from v0.5.x
 

Project.toml

@@ -1,7 +1,7 @@
 name = "Trixi"
 uuid = "a7f1ee26-1774-49b1-8366-f1abc58fbfcb"
 authors = ["Michael Schlottke-Lakemper <[email protected]>", "Gregor Gassner <[email protected]>", "Hendrik Ranocha <[email protected]>", "Andrew R. Winters <[email protected]>", "Jesse Chan <[email protected]>"]
-version = "0.6.6-pre"
+version = "0.6.9-pre"
 
 [deps]
 CodeTracking = "da1fd8a2-8d9e-5ec2-8556-3022fb5608a2"

docs/literate/make.jl

@@ -10,17 +10,17 @@ function create_files(title, file, repo_src, pages_dir, notebooks_dir; folder=""
     end
 
     binder_logo   = "https://mybinder.org/badge_logo.svg"
-    nbviewer_logo = "https://raw.githubusercontent.com/jupyter/design/master/logos/Badges/nbviewer_badge.svg"
-    download_logo = "https://camo.githubusercontent.com/aea75103f6d9f690a19cb0e17c06f984ab0f472d9e6fe4eadaa0cc438ba88ada/68747470733a2f2f696d672e736869656c64732e696f2f62616467652f646f776e6c6f61642d6e6f7465626f6f6b2d627269676874677265656e"
+    nbviewer_logo = "https://img.shields.io/badge/render-nbviewer-f37726"
+    raw_notebook_logo = "https://img.shields.io/badge/raw-notebook-4cc61e"
 
     notebook_path = "tutorials/notebooks/$notebook_filename"
     binder_url   = "https://mybinder.org/v2/gh/trixi-framework/Trixi.jl/tutorial_notebooks?filepath=$notebook_path"
     nbviewer_url = "https://nbviewer.jupyter.org/github/trixi-framework/Trixi.jl/blob/tutorial_notebooks/$notebook_path"
-    download_url = "https://raw.githubusercontent.com/trixi-framework/Trixi.jl/tutorial_notebooks/$notebook_path"
+    raw_notebook_url = "https://raw.githubusercontent.com/trixi-framework/Trixi.jl/tutorial_notebooks/$notebook_path"
 
     binder_badge   = "# [![]($binder_logo)]($binder_url)"
     nbviewer_badge = "# [![]($nbviewer_logo)]($nbviewer_url)"
-    download_badge = "# [![]($download_logo)]($download_url)"
+    raw_notebook_badge = "# [![]($raw_notebook_logo)]($raw_notebook_url)"
 
     # Generate notebook file
     function preprocess_notebook(content)
@@ -32,7 +32,7 @@ function create_files(title, file, repo_src, pages_dir, notebooks_dir; folder=""
 
     # Generate markdown file
     function preprocess_docs(content)
-        return string("# # [$title](@id $(splitext(file)[1]))\n $binder_badge\n $nbviewer_badge\n $download_badge\n\n", content)
+        return string("# # [$title](@id $(splitext(file)[1]))\n $binder_badge\n $nbviewer_badge\n $raw_notebook_badge\n\n", content)
     end
     Literate.markdown(joinpath(repo_src, folder, file), joinpath(pages_dir, folder); preprocess=preprocess_docs,)
 end

docs/literate/src/files/index.jl

@@ -5,9 +5,9 @@
 
 # Right now, you are using the classic documentation. The corresponding interactive notebooks can
 # be opened in [Binder](https://mybinder.org/) and viewed in [nbviewer](https://nbviewer.jupyter.org/)
-# via the icons ![](https://mybinder.org/badge_logo.svg) and ![](https://raw.githubusercontent.com/jupyter/design/master/logos/Badges/nbviewer_badge.svg)
+# via the icons ![](https://mybinder.org/badge_logo.svg) and ![](https://img.shields.io/badge/render-nbviewer-f37726)
 # in the respective tutorial.
-# You can download the raw notebooks from GitHub via ![](https://camo.githubusercontent.com/aea75103f6d9f690a19cb0e17c06f984ab0f472d9e6fe4eadaa0cc438ba88ada/68747470733a2f2f696d672e736869656c64732e696f2f62616467652f646f776e6c6f61642d6e6f7465626f6f6b2d627269676874677265656e).
+# You can also open the raw notebook files via ![](https://img.shields.io/badge/raw-notebook-4cc61e).
 
 # **Note:** To improve responsiveness via caching, the notebooks are updated only once a week. They are only
 # available for the latest stable release of Trixi.jl at the time of caching.

docs/literate/src/files/non_periodic_boundaries.jl

@@ -16,6 +16,8 @@
 # state as arguments, and solves an approximate Riemann problem to introduce dissipation (and
 # hence stabilization) at the boundary. Hence, the performance of the Dirichlet BC depends on the
 # fidelity of the numerical surface flux.
+# An easy-to read introductory reference on this topic is the paper by 
+# [Mengaldo et al.](https://doi.org/10.2514/6.2014-2923).
 
 # The passed boundary value function is called with the same arguments as an initial condition
 # function, i.e.