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Add quasi-1D Euler to NEWS.md #1780

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merged 1 commit into from
Dec 18, 2023
Merged

Add quasi-1D Euler to NEWS.md #1780

merged 1 commit into from
Dec 18, 2023

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@jlchan jlchan commented Dec 18, 2023

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@jlchan jlchan requested a review from sloede December 18, 2023 14:34
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Review checklist

This checklist is meant to assist creators of PRs (to let them know what reviewers will typically look for) and reviewers (to guide them in a structured review process). Items do not need to be checked explicitly for a PR to be eligible for merging.

Purpose and scope

  • The PR has a single goal that is clear from the PR title and/or description.
  • All code changes represent a single set of modifications that logically belong together.
  • No more than 500 lines of code are changed or there is no obvious way to split the PR into multiple PRs.

Code quality

  • The code can be understood easily.
  • Newly introduced names for variables etc. are self-descriptive and consistent with existing naming conventions.
  • There are no redundancies that can be removed by simple modularization/refactoring.
  • There are no leftover debug statements or commented code sections.
  • The code adheres to our conventions and style guide, and to the Julia guidelines.

Documentation

  • New functions and types are documented with a docstring or top-level comment.
  • Relevant publications are referenced in docstrings (see example for formatting).
  • Inline comments are used to document longer or unusual code sections.
  • Comments describe intent ("why?") and not just functionality ("what?").
  • If the PR introduces a significant change or new feature, it is documented in NEWS.md.

Testing

  • The PR passes all tests.
  • New or modified lines of code are covered by tests.
  • New or modified tests run in less then 10 seconds.

Performance

  • There are no type instabilities or memory allocations in performance-critical parts.
  • If the PR intent is to improve performance, before/after time measurements are posted in the PR.

Verification

  • The correctness of the code was verified using appropriate tests.
  • If new equations/methods are added, a convergence test has been run and the results
    are posted in the PR.

Created with ❤️ by the Trixi.jl community.

@sloede sloede merged commit b5d0a50 into main Dec 18, 2023
4 of 5 checks passed
@sloede sloede deleted the jlchan-patch-1 branch December 18, 2023 14:36
jmark pushed a commit that referenced this pull request Jan 12, 2024
@jlchan
Update NEWS.md (#1780)
852f720
ranocha added a commit that referenced this pull request Jan 31, 2024
@jmark @ranocha
@andrewwinters5000 @jlchan @apey236 @DanielDoehring @sloede @benegee @dependabot @patrickersing @JoshuaLampert
Feature: T8codeMesh backend with MPI support (#1803)
d53fdb5 
* Initial commit for the new feature using t8code as meshing backend.

* Delete t8code_2d_dgsem

* Added new examples and tests. Testing updates for T8code.jl.

* Worked in the comments.

* Fixed spelling.

* Update src/auxiliary/auxiliary.jl

Co-authored-by: Hendrik Ranocha <[email protected]>

* Added whitespace in Unions.

* Adapted commented out code block reporting the no. of elements per level.

* Added dummy save mesh support for .

* Added test .

* Added  to  method signature.

* Deleted unnecessary comments.

* Removed commented out tests.

* Fixed Morton ordering bug in 2D at mortar interfaces.

* Disabled `save_solution` callbacks and added more tests.

* Added more tests.

* Updated code according to the review.

* Update src/auxiliary/t8code.jl

Co-authored-by: Hendrik Ranocha <[email protected]>

* Update src/auxiliary/t8code.jl

Co-authored-by: Hendrik Ranocha <[email protected]>

* Update src/auxiliary/t8code.jl

Co-authored-by: Hendrik Ranocha <[email protected]>

* Update src/auxiliary/t8code.jl

Co-authored-by: Hendrik Ranocha <[email protected]>

* Update src/meshes/t8code_mesh.jl

Co-authored-by: Hendrik Ranocha <[email protected]>

* Update src/meshes/t8code_mesh.jl

Co-authored-by: Hendrik Ranocha <[email protected]>

* Update src/meshes/t8code_mesh.jl

Co-authored-by: Hendrik Ranocha <[email protected]>

* Update src/meshes/t8code_mesh.jl

Co-authored-by: Hendrik Ranocha <[email protected]>

* Update src/meshes/t8code_mesh.jl

Co-authored-by: Hendrik Ranocha <[email protected]>

* Update src/meshes/t8code_mesh.jl

Co-authored-by: Hendrik Ranocha <[email protected]>

* Update src/solvers/dgsem_t8code/containers_2d.jl

Co-authored-by: Hendrik Ranocha <[email protected]>

* Update src/meshes/t8code_mesh.jl

Co-authored-by: Hendrik Ranocha <[email protected]>

* Code cleanup.

* Updated to [email protected]

* Fixing minor issues.

* Fixed typo.

* Code cleanup.

* Enabled `set_ghost` in examples.

* Generalized type info in function signature.

* Added namespace qualifier.

* Updated comments.

* Refactored code and deleted lots of it.

* Removed a copy operation.

* Initial commit.

* Fxinig minor bugs.

* Fixed minor typo.

* Added first 3d example and fixed segfault.

* Added many 3D examples and tests.

* Backup.

* Fixed merging issues.

* Adding more tests.

* Fixed some merging issues and formatting.

* Fixed spelling.

* Fixed spelling and changed assert macro.

* Applied automatic formatting.

* Applied automatic formatting.

* Backup.

* Removed superfluous outer constructor for T8codeMesh.

* Added return statement for consistency.

* Fixed wrong indentation by autoformatter.

* Added comments.

* Made sure an exception is thrown.

* Changed flags for sc_init for t8code initialization.

* Updated formatting.

* Workaround for error about calling MPI routines after MPI has been finalized.

* Upped to T8code v0.4.1.

* Added mpi_finailize_hook for proper memory cleanup.

* Added t8code to test_threaded.jl

* Added a `save_mesh_file` call in order to satisfy code coverage.

* Improved finalizer logic for T8coeMesh.

* Refined code.

* Restructured to do blocks.

* Moved save_mesh_file call to test file.

* Fixed spelling error.

* Made sc_finalize optional.

* Fixed spelling.

* Cleaned up examples.

* Updated and cleaned t8code solver codes.

* Updated tests for t8code 3D code.

* Fixed spelling.

* Update elixir_euler_source_terms_nonconforming_unstructured_curved.jl

* Update elixir_euler_source_terms_nonconforming_unstructured_curved.jl

* Fixed indentation.

* Update src/solvers/dgsem_structured/dg_3d.jl

Co-authored-by: Hendrik Ranocha <[email protected]>

* Update src/solvers/dgsem_t8code/containers_3d.jl

Co-authored-by: Andrew Winters <[email protected]>

* Update src/callbacks_step/amr_dg3d.jl

Co-authored-by: Andrew Winters <[email protected]>

* Update examples/t8code_3d_dgsem/elixir_euler_ec.jl

Co-authored-by: Andrew Winters <[email protected]>

* Update examples/t8code_3d_dgsem/elixir_advection_unstructured_curved.jl

Co-authored-by: Andrew Winters <[email protected]>

* Update examples/t8code_3d_dgsem/elixir_advection_amr_unstructured_curved.jl

Co-authored-by: Andrew Winters <[email protected]>

* Update src/solvers/dgsem_structured/dg_3d.jl

Co-authored-by: Hendrik Ranocha <[email protected]>

* Update src/meshes/t8code_mesh.jl

Co-authored-by: Hendrik Ranocha <[email protected]>

* Update src/callbacks_step/analysis_dg3d.jl

Co-authored-by: Hendrik Ranocha <[email protected]>

* Update examples/t8code_3d_dgsem/elixir_euler_free_stream.jl

Co-authored-by: Andrew Winters <[email protected]>

* Removed NDIMS from T8codeMesh construction in case of p4est/p8est connectivity input.

* Aligned T8codeMesh constructur with other mesh constructors.

* Update examples/t8code_3d_dgsem/elixir_euler_sedov.jl

Co-authored-by: Andrew Winters <[email protected]>

* Update examples/t8code_3d_dgsem/elixir_euler_sedov.jl

Co-authored-by: Andrew Winters <[email protected]>

* Cleanup up.

* Added @allocated test.

* Fixed formatting.

* Applied formatter.

* Added ParallelT8codeMesh to constructor.

* Code cleanup.

* Extended T8codeMesh backend to support MPI interfaces datastructures.

* Update NEWS.md (#1780)

* set version to v0.6.5

* set development version to v0.6.6-pre

* hotfix: restrict DiffEqBase.jl to let CI pass (#1788)

* hotfix: restrict DiffEqBase.jl to let CI pass

* restrict DiffEqBase.jl in main Project.toml

* Update Project.toml

* Parabolic Mortar for AMR `P4estMesh{3}` (#1765)

* Clean branch

* Un-Comment

* un-comment

* test coarsen

* remove redundancy

* Remove support for passive terms

* expand resize

* comments

* format

* Avoid code duplication

* Update src/callbacks_step/amr_dg1d.jl

Co-authored-by: Michael Schlottke-Lakemper <[email protected]>

* comment

* comment & format

* Try to increase coverage

* Slightly more expressive names

* Apply suggestions from code review

* add specifier for 1d

* Structs for resizing parabolic helpers

* check if mortars are present

* reuse `reinitialize_containers!`

* resize calls for parabolic helpers

* update analysis callbacks

* Velocities for compr euler

* Init container

* correct copy-paste error

* resize each dim

* add dispatch

* Add AMR for shear layer

* USe only amr shear layer

* first steps towards p4est parabolic amr

* Add tests

* remove plots

* Format

* remove redundant line

* platform independent tests

* No need for different flux_viscous comps after adding container_viscous to p4est

* Laplace 3d

* Longer times to allow converage to hit coarsen!

* Increase testing of Laplace 3D

* Add tests for velocities

* remove comment

* add elixir for amr testing

* adding commented out mortar routines in 2D

* Adding Mortar to 2d dg parabolic term

* remove testing snippet

* fix comments

* add more arguments for dispatch

* add some temporary todo notes

* some updates for AP and KS

* specialize mortar_fluxes_to_elements

* BUGFIX: apply_jacobian_parabolic! was incorrect for P4estMesh

* fixed rhs_parabolic! for mortars

* more changes to elixir

* indexing bug

* comments

* Adding the example for nonperiodic BCs with amr

* hopefully this fixes AMR boundaries for parabolic terms

* add elixir

* Example with non periodic bopundary conditions

* remove cruft

* 3D parabolic amr

* TGV elixir

* Creating test for AMR 3D parabolic

* Formatting

* test formatting

* Update src/Trixi.jl

* Update src/equations/compressible_euler_1d.jl

* Update src/equations/compressible_euler_2d.jl

* Update src/equations/compressible_euler_3d.jl

* Update src/solvers/dgsem_tree/container_viscous_2d.jl

* Update src/solvers/dgsem_tree/container_viscous_2d.jl

* Update src/solvers/dgsem_tree/container_viscous_2d.jl

* Update src/solvers/dgsem_tree/container_viscous_3d.jl

* Update src/solvers/dgsem_tree/container_viscous_3d.jl

* Update src/solvers/dgsem_tree/container_viscous_3d.jl

* Update src/solvers/dgsem_p4est/dg_2d_parabolic.jl

* Update src/solvers/dgsem_p4est/dg_2d_parabolic.jl

* Update src/solvers/dgsem_tree/dg_2d_parabolic.jl

* Update src/solvers/dgsem_tree/dg_2d_parabolic.jl

* Update src/solvers/dgsem_tree/dg_2d_parabolic.jl

* Update src/solvers/dgsem_tree/dg_2d_parabolic.jl

* Update src/solvers/dgsem_tree/dg_2d_parabolic.jl

* Update src/solvers/dgsem_tree/dg_2d_parabolic.jl

* Update src/solvers/dgsem_tree/dg_2d_parabolic.jl

* Update src/solvers/dgsem_tree/dg_2d_parabolic.jl

* Update src/solvers/dgsem_tree/dg_2d_parabolic.jl

* Update test/test_parabolic_3d.jl

* Update src/solvers/dgsem_tree/dg_3d_parabolic.jl

* Update src/solvers/dgsem_tree/dg_3d_parabolic.jl

* Update src/solvers/dgsem_tree/dg_3d_parabolic.jl

* Update src/solvers/dgsem_tree/dg_3d_parabolic.jl

* Update src/solvers/dgsem_tree/dg_3d_parabolic.jl

* Update src/solvers/dgsem_tree/dg_3d_parabolic.jl

* Update src/solvers/dgsem_tree/dg_3d_parabolic.jl

* Update src/solvers/dgsem_tree/dg_3d_parabolic.jl

* Update src/solvers/dgsem_p4est/dg_3d_parabolic.jl

* Update src/solvers/dgsem_p4est/dg_3d_parabolic.jl

* Update src/solvers/dgsem_p4est/dg_3d_parabolic.jl

* Update src/solvers/dgsem_p4est/dg_3d_parabolic.jl

* Update src/solvers/dgsem_p4est/dg_2d_parabolic.jl

* Update src/solvers/dgsem_p4est/dg_2d.jl

* Update src/solvers/dgsem_p4est/dg_2d_parabolic.jl

* Update src/solvers/dgsem_p4est/dg_2d_parabolic.jl

* Update test/test_parabolic_3d.jl

* Update test/test_parabolic_3d.jl

* Update test/test_parabolic_3d.jl

* Update examples/p4est_3d_dgsem/elixir_navierstokes_3d_blast_wave_amr.jl

* Update examples/p4est_3d_dgsem/elixir_navierstokes_taylor_green_vortex_amr.jl

* Update examples/p4est_3d_dgsem/elixir_navierstokes_3d_blast_wave_amr.jl

* Update examples/p4est_3d_dgsem/elixir_navierstokes_taylor_green_vortex_amr.jl

* Update examples/p4est_3d_dgsem/elixir_navierstokes_3d_blast_wave_amr.jl

* Update examples/p4est_3d_dgsem/elixir_navierstokes_3d_blast_wave_amr.jl

* Update examples/p4est_3d_dgsem/elixir_navierstokes_taylor_green_vortex_amr.jl

* Update examples/p4est_3d_dgsem/elixir_navierstokes_3d_blast_wave_amr.jl

* Update examples/p4est_3d_dgsem/elixir_navierstokes_taylor_green_vortex_amr.jl

* Update examples/p4est_3d_dgsem/elixir_navierstokes_3d_blast_wave_amr.jl

* Update examples/p4est_3d_dgsem/elixir_navierstokes_taylor_green_vortex_amr.jl

* Update dg_3d_parabolic.jl

* Update test_parabolic_3d.jl

* Update elixir_navierstokes_3d_blast_wave_amr.jl

* Update elixir_navierstokes_taylor_green_vortex_amr.jl

* Update dg_3d_parabolic.jl

* Update test_parabolic_3d.jl

* Update test_parabolic_3d.jl

* Update examples/p4est_3d_dgsem/elixir_navierstokes_3d_blast_wave_amr.jl

* Update elixir_navierstokes_3d_blast_wave_amr.jl

* Update elixir_navierstokes_taylor_green_vortex_amr.jl

* Update dg_3d_parabolic.jl

* Update test_parabolic_3d.jl

* Delete examples/p4est_3d_dgsem/elixir_navierstokes_3d_blast_wave_amr.jl

* Create elixir_navierstokes_blast_wave_amr.jl

* Update test_parabolic_3d.jl

* Update NEWS.md

* Update NEWS.md

* Update src/solvers/dgsem_p4est/dg_3d_parabolic.jl

* Update src/solvers/dgsem_p4est/dg_3d_parabolic.jl

* Update src/solvers/dgsem_p4est/dg_3d_parabolic.jl

* Update src/solvers/dgsem_p4est/dg_3d_parabolic.jl

---------

Co-authored-by: Daniel_Doehring <[email protected]>
Co-authored-by: Daniel Doehring <[email protected]>
Co-authored-by: Michael Schlottke-Lakemper <[email protected]>
Co-authored-by: Jesse Chan <[email protected]>
Co-authored-by: Jesse Chan <[email protected]>

* reset the timer also on non-root MPI processes (#1787)

Co-authored-by: Michael Schlottke-Lakemper <[email protected]>

* Add HLLC flux for non-cartesian meshes to CompressibleEulerEquations{2,3}D (#1790)

* add HLLC flux for non-cartesian meshes

* add tests for HLLC flux

* Add 2D test with HLLC

* Update test_p4est_3d.jl

* Update test_p4est_2d.jl

* Update test_p4est_3d.jl

* Update src/equations/compressible_euler_3d.jl

Co-authored-by: Hendrik Ranocha <[email protected]>

* Update src/equations/compressible_euler_2d.jl

Co-authored-by: Hendrik Ranocha <[email protected]>

* Update compressible_euler_2d.jl

* Update compressible_euler_3d.jl

* Update test_p4est_2d.jl

* Update test_p4est_3d.jl

* Update compressible_euler_2d.jl

* Update compressible_euler_2d.jl

---------

Co-authored-by: Daniel Doehring <[email protected]>
Co-authored-by: Hendrik Ranocha <[email protected]>

* Bump crate-ci/typos from 1.16.23 to 1.16.26 (#1793)

Bumps [crate-ci/typos](https://github.com/crate-ci/typos) from 1.16.23 to 1.16.26.
- [Release notes](https://github.com/crate-ci/typos/releases)
- [Changelog](https://github.com/crate-ci/typos/blob/master/CHANGELOG.md)
- [Commits](crate-ci/typos@v1.16.23...v1.16.26)

---
updated-dependencies:
- dependency-name: crate-ci/typos
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Extend `CompressibleEulerQuasi1D` and `ShallowWaterQuasi1D` to `DGMulti`  (#1797)

* adding DGMulti versions of fluxes

* remove incorrect factor of 2

* add example and test

* formatting

* add comment

* revert removing factor of 2

* formatting

* add SWE quasi-1D test

d

* enable quasi1D SWE for DGMulti

* add docstrings

* formatting

* Update src/equations/compressible_euler_quasi_1d.jl

Co-authored-by: Hendrik Ranocha <[email protected]>

* adding comments explaining why `normal_direction` is included in 1D

* Apply suggestions from code review

Co-authored-by: Daniel Doehring <[email protected]>

---------

Co-authored-by: Hendrik Ranocha <[email protected]>
Co-authored-by: Daniel Doehring <[email protected]>

* Fix boundary_condition_slip_wall for SWE (#1798)

* fix_wall_bc

* add test

* apply formatter

* adjust some comments

* update elixir and test; add topography

* comments explaining usage of `ForwardDiff.jacobian` (#1800)

* Bump actions/upload-artifact from 3 to 4 (#1795)

* Bump actions/upload-artifact from 3 to 4

Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 3 to 4.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](actions/upload-artifact@v3...v4)

---
updated-dependencies:
- dependency-name: actions/upload-artifact
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>

* bump download-artifact to v4

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Hendrik Ranocha <[email protected]>

* Code cleanup.

* Applied formatter.

* Registered mpi t8code tests.

* Added load-balancing feature to T8codeMesh.

* Applied formatter.

* Updated some test values.

* Fixed typo.

* Removed unused member variable.

* Apply suggestions from code review

Co-authored-by: Daniel Doehring <[email protected]>

* suggestions from review

* fix format (strange?)

* Added comments to help interpreting the source code.

* Update src/callbacks_step/amr_dg3d.jl

Co-authored-by: Benedict <[email protected]>

* Adhered to unified mesh constructor calling scheme.

* Applied formatter.

* Switched to Float64 instead of Cdouble.

* Update src/meshes/t8code_mesh.jl

Co-authored-by: Daniel Doehring <[email protected]>

* Refactored negative volume check.

* Applied formatter.

* Fixed typo resp. bug.

* Apply suggestions from code review

Co-authored-by: Hendrik Ranocha <[email protected]>

* add missing allocation checks

* Some refactoring.

* Deleted msh file.

* Fixed a bug.

* Code cleanup.

* Ignore gmsh files.

* Removed adapt! from global namespace.

* Added documentation.

* Added @test_warn to test.

* Applied formatter.

* Apply suggestions from code review

Co-authored-by: Hendrik Ranocha <[email protected]>
Co-authored-by: Joshua Lampert <[email protected]>

* Turned @warn to @info.

* Code cleanup and added @deprecated routines in order to avoid breaking release.

* Applied formatter.

* Added formatter pragmas to avoid ugly formatting.

* Applied formatter.

* Code cleanup. Documenting.

* Applied formatter.

* Removed remnants of development.

* Removed dubious commented out line.

* minors in comments

skip ci

* Added `retrieve` function which downloads missing mesh file without race conditions in case of MPI environment.

* Added Downloads as dependency.

* Added missing namespace qualifier.

* add compat bound

* Apply suggestions from code review

Co-authored-by: Daniel Doehring <[email protected]>
Co-authored-by: Joshua Lampert <[email protected]>

* use retrieve everywhere for downloading

* try to improve formatting

* and what julia formatter makes out of it

* try to consolidate max_dt computation

* format

* add default allocation tests

* remove left over vtk_write

* Revert "try to consolidate max_dt computation"

This reverts commit d0e9a2c.

* fix variable name

* less consolidation

* remove unused variables

* Update src/auxiliary/auxiliary.jl

Co-authored-by: Hendrik Ranocha <[email protected]>

* Update src/Trixi.jl

Co-authored-by: Hendrik Ranocha <[email protected]>

* revert b068d11 (manually)

* use Trixi.download

* Revert "use retrieve everywhere for downloading"

This reverts commit a438547.

* change to new Trixi.download signature

* format

* remove merge leftover

* format

* Code refactor. Applied review comments.

* Fixed bug.

* Fixed typo.

* Update src/auxiliary/auxiliary.jl

Co-authored-by: Hendrik Ranocha <[email protected]>

* Update src/meshes/t8code_mesh.jl

Co-authored-by: Hendrik Ranocha <[email protected]>

* Update src/meshes/t8code_mesh.jl

Co-authored-by: Hendrik Ranocha <[email protected]>

* Applying review comments.

* Added return early if there is nothing to do in adapt routines.

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: Johannes Markert <[email protected]>
Co-authored-by: Hendrik Ranocha <[email protected]>
Co-authored-by: Andrew Winters <[email protected]>
Co-authored-by: Jesse Chan <[email protected]>
Co-authored-by: Hendrik Ranocha <[email protected]>
Co-authored-by: Ahmad Peyvan <[email protected]>
Co-authored-by: Daniel_Doehring <[email protected]>
Co-authored-by: Daniel Doehring <[email protected]>
Co-authored-by: Michael Schlottke-Lakemper <[email protected]>
Co-authored-by: Jesse Chan <[email protected]>
Co-authored-by: Benedict <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Patrick Ersing <[email protected]>
Co-authored-by: Benedict Geihe <[email protected]>
Co-authored-by: Joshua Lampert <[email protected]>
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@jlchan @sloede