tyang816

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Yang Tan tyang816

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AI4Science & Deep Learninging

48 followers · 11 following

Shanghai AI Lab
Shanghai, China
01:20 (UTC +08:00)
https://tyang816.github.io/
https://orcid.org/0009-0004-7261-1705
@mashiroaugust
https://scholar.google.com/citations?user=dnDHy6YAAAAJ&hl=zh-CN

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tyang816/README.md

Hi, I'm Yang Tan 👋

AI research: Large Language Models, Graph Neural Networks

Biological research: Directed Evolution, Function Prediction, Binder Design

🎈 Seleted Papers

Tan Y, Liu C, Gao J, et al. VenusFactory: A Unified Platform for Protein Engineering Data Retrieval and Language Model Fine-Tuning. ACL Demo (Under review), 2025.
Tan Y, Wang R, Wu B, et al. Retrieval-Enhanced Mutation Mastery: Augmenting Zero-Shot Prediction of Protein Language Model. ISMB/ECCB, 2025.
Li S*, Tan Y*, Ke S, et al. Immunogenicity Prediction with Dual Attention Enables Vaccine Target Selection. ICLR, 2025.
Li M*, Tan Y*, Ma X, et al. ProSST: Protein Language Modeling with Quantized Structure and Disentangled Attention. NeurIPS, 2024.
Tan Y, Zhou B, Zheng L, et al. Semantical and Topological Protein Encoding Toward Enhanced Bioactivity and Thermostability. eLife, 2024.
Tan Y, Zhang Z, Li M, et al. MedChatZH: A tuning LLM for traditional Chinese medicine consultations. Computers in Biology and Medicine, 2024.

Pinned Loading

MedChatZH MedChatZH Public

🤖 中文医疗问诊大模型MedChatZH，具有中西医问诊、优秀的对话能力 (Computers in Biology and Medchine 2024)

Python 74 7
ai4protein/VenusFactory ai4protein/VenusFactory Public

🏭 Easy data acquisition, benchmark resources, PLM fine-tuning for bio-researchers.

Python 61 9
ai4protein/ProtSSN ai4protein/ProtSSN Public

🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2024).

Python 57 5
ai4protein/VenusREM ai4protein/VenusREM Public

🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion.

Python 47 7
SES-Adapter SES-Adapter Public

🎈 Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Modeling 2024).

Python 21 1
ProtSolM ProtSolM Public

📈 Fusion of sequence, structure and feature information to improve protein solubility prediction (IEEE BIBM 2024).

Python 11