feat: update crosswalk config (#15)

uc-cdis · Jul 25, 2024 · 83ac2f4 · 83ac2f4
1 parent fbb812b
commit 83ac2f4
Showing 1 changed file with 21 additions and 10 deletions.
diff --git a/config/gen3/crosswalk.json b/config/gen3/crosswalk.json
@@ -3,14 +3,16 @@
   "mapping" : {
     "source" : {
       "id": "prom",
-      "label": "Prometheus",
+      "label": "PROMETHEUS",
       "description" : "PROject for Military Exposures and Toxin History Evaluation in US Service Members"
     },
+    // PROMETHEUS, GDC, PDC, BLOODPAC, dbGaP?
+    // /
     "external" : [
       {
-        "id": "Prometheus",
-        "label": "Prometheus",
-        "dataPath": "crosswalk->subject->https://www.cancerimagingarchive.net->subject.subject_id->value"
+        "id": "PROMETHEUS",
+        "label": "PROMETHEUS",
+        "dataPath": "crosswalk->subject->https://prometheus.data-commons.org->case_id->value"
       },
       {
         "id": "GDC",
@@ -21,14 +23,23 @@
       {
         "id": "PDC",
         "label": "PDC",
-        "dataPath": "crosswalk->subject->https://vpodc.data-commons.org->case.submitter_id->value",
-        "description": "Veterans Precision Oncology Data Commons® (VPOC) The Veterans Data Commons supports the management, analysis and sharing of veteran oncologic data for the research community and aims to accelerate discovery and development of therapies, diagnostic tests, and other technologies for precision oncology"
+        "dataPath": "crosswalk->subject->https://proteomic.datacommons.cancer.gov->case_id->value"
       },
       {
-        "id": "Bloodpac",
-        "label": "Bloodpac",
-        "dataPath": "crosswalk->subject->https://www.cancerimagingarchive.net->subject.subject_id->value",
-        "description": "The Cancer Imaging Archive (TCIA) is a service which de-identifies and hosts a large archive of medical images of cancer accessible for public download"
+        "id": "BLOODPAC",
+        "label": "BLOODPAC",
+        "dataPath": "crosswalk->subject->https://data.bloodpac.org->subject.subject_id->value"
+      },
+      {
+        "id": "PDC",
+        "label": "PDC",
+        "dataPath": "crosswalk->subject->https://proteomic.datacommons.cancer.gov->case_id->value",
+        "description": "Veterans Precision Oncology Data Commons® (VPODC) The Veterans Data Commons supports the management, analysis and sharing of veteran oncologic data for the research community and aims to accelerate discovery and development of therapies, diagnostic tests, and other technologies for precision oncology"
+      },
+      {
+        "id": "dbGaP",
+        "label": "dbGaP",
+        "dataPath": "crosswalk->subject->https://www.ncbi.nlm.nih.gov->dbgap_subject_id->value"
       }
     ]
   }