Merge pull request #125 from uc-cdis/publicize_pfb_protected_functions

 Making a few protected functions public for raw file ingestion

src/pfb/importers/gen3dict.py

@@ -20,13 +20,13 @@ def from_dict(ctx, url_or_path):
     """
     try:
         with ctx.obj["writer"] as writer:
-            _from_dict(writer, url_or_path)
+            write_from_dict(writer, url_or_path)
     except Exception:
         click.secho("Failed!", fg="red", bold=True, err=True)
         raise
 
 
-def _from_dict(writer, url_or_path):
+def write_from_dict(writer, url_or_path):
     if writer.isatty:
         click.secho("Error: cannot output to TTY.", fg="red", bold=True, err=True)
         return

src/pfb/importers/json.py

@@ -74,11 +74,11 @@ def _from_json(metadata, path, program, project):
         if isinstance(json_data, dict):
             json_data = [json_data]
         for json_record in json_data:
-            record = _convert_json(node_name, json_record, program, project, link_dests)
+            record = convert_json(node_name, json_record, program, project, link_dests)
             yield record
 
 
-def _convert_json(node_name, json_record, program, project, link_dests):
+def convert_json(node_name, json_record, program, project, link_dests):
     relations = []
     try:
         node_id = json_record["submitter_id"]