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@uio-bmi

Centre for Bioinformatics, University of Oslo

The hub of bioinformatics and computational biology at the University of Oslo

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  1. immuneML immuneML Public

    immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

    Python 62 29

  2. compairr compairr Public

    Comparison of Adaptive Immune Receptor Repertoires

    C++ 25 5

  3. graph_peak_caller graph_peak_caller Public

    ChIP-seq peak caller for reads mapped to a graph-based reference genome

    Python 19 8

Repositories

Showing 10 of 82 repositories
  • localega-tsd-proxy Public
    uio-bmi/localega-tsd-proxy’s past year of commit activity
    Java 0 MIT 0 6 1 Updated Nov 22, 2024
  • SimCal Public

    Simulation Calibration codebase for evaluating ML pipelines between real and learned worlds

    uio-bmi/SimCal’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Nov 22, 2024
  • immuneml_tools Public

    Galaxy tools using the immuneML conda package.

    uio-bmi/immuneml_tools’s past year of commit activity
    Python 1 0 0 0 Updated Nov 22, 2024
  • immuneML Public

    immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

    uio-bmi/immuneML’s past year of commit activity
    Python 62 AGPL-3.0 29 0 0 Updated Nov 21, 2024
  • crypt4gh Public

    Crypt4GH standard implementation

    uio-bmi/crypt4gh’s past year of commit activity
    Java 2 MIT 6 2 11 Updated Nov 20, 2024
  • ligo Public

    LIgO is a tool for simulation of adaptive immune receptors and repertoires.

    uio-bmi/ligo’s past year of commit activity
    Python 0 AGPL-3.0 2 0 0 Updated Nov 12, 2024
  • IN-BIOSx000 Public Forked from arvindsundaram/IN-BIOSx000

    Course material for the IN-BIOSx000 course "Sequencing technologies, data analysis, and applications" at the University of Oslo

    uio-bmi/IN-BIOSx000’s past year of commit activity
    Python 0 CC0-1.0 11 0 0 Updated Nov 12, 2024
  • machine_learning_in_comp_bio_exercises Public

    These exercises are a part of the IN-BIOS5000 course at UiO, for the intro lectures on machine learning in computational biology.

    uio-bmi/machine_learning_in_comp_bio_exercises’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Nov 8, 2024
  • tsd-file-api-client Public archive

    TSD File API Client

    uio-bmi/tsd-file-api-client’s past year of commit activity
    Java 0 MIT 2 2 4 Updated Oct 30, 2024
  • stats_for_cs Public

    Accompanying notebooks for the new stats course for computer scientists with simulations

    uio-bmi/stats_for_cs’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 11, 2024
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