publish-dev-to-pypi-and-conda.yml

name: Publish Python distribution of dev immuneML to PyPI and Conda

on:
  push:
    branches:
      - nar

jobs:
  build_python_package:
    name: build distribution
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - name: Set up Python
        uses: actions/setup-python@v4
        with:
          python-version: "3.x"
      - name: Install pypa/build
        run: >-
          python3 -m
          pip install
          build
          --user
      - name: Build a binary wheel and a source tarball
        run: python3 -m build
      - name: Store the distribution packages
        uses: actions/upload-artifact@v3
        with:
          name: python-package-distributions
          path: dist/

  publish_to_pypi:
    name: Publish Python distribution to PyPI
    needs: [ build_python_package ]
    runs-on: ubuntu-latest
    environment:
      name: dev_nar_env
      url: https://pypi.org/p/immuneML_dev
    permissions:
      id-token: write
    steps:
    - name: Download all the dists
      uses: actions/download-artifact@v3
      with:
        name: python-package-distributions
        path: dist/
    - name: Publish distribution to PyPI
      uses: pypa/gh-action-pypi-publish@release/v1

  make_conda_package_from_pypi:
    name: Make conda package from PyPI
    runs-on: ubuntu-latest
    needs: [ publish_to_pypi ]
    steps:
      - uses: actions/checkout@v4
      - name: Build conda meta.yaml from PyPI package
        run: |
          conda install conda-build
          conda skeleton pypi immuneML-dev
          conda config --add channels conda-forge
          conda config --add channels bioconda
          python3 scripts/update_conda_meta_file.py
      - name: Build conda package from meta.yaml
        run: conda-build immuneML-dev

  deploy_to_conda:
    name: Conda deployment of package with Python ${{ matrix.python-version }}
    runs-on: ubuntu-latest
    needs: [ make_conda_package_from_pypi ]
    strategy:
      matrix:
        python-version: [ "3.8", "3.9", "3.10", "3.11" ]
    steps:
      - uses: actions/checkout@v4
        with:
          fetch-depth: 0
      - name: Conda environment creation and activation
        uses: conda-incubator/setup-miniconda@v2
        with:
          python-version: ${{ matrix.python-version }}
          environment-file: immuneML-dev/meta.yaml
          auto-update-conda: false
          auto-activate-base: false
          show-channel-urls: true
      - name: Build and upload the conda packages
        uses: uibcdf/action-build-and-upload-conda-packages@v1.2.0
        with:
          meta_yaml_dir: immuneML-dev/conda-build
          python-version: ${{ matrix.python-version }}
          platform_linux-64: true
          platform_osx-64: true
          platform_win-64: true
          user: milenapavlovic
          label: auto
          token: ${{ secrets.ANACONDA_TOKEN }}