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Removed previous git commit hook logic
Added pre-commit hooks section See https://github.com/umccr/cwl-ica/pull/289 for more info
Added conda channel issue
Update release for cwl-ica-cli
Added IDE steps
Added new 'stories' page Stories page ties goes from start-to-finish to solve a problem through cwl-ica and ica-ica-lazy. Experience with both cwl-ica and ica-ica-lazy is expected.
Added manually trigger workflows to wiki
Updated example on the CWL_ICA_API_KEY_SH script
Merge remote-tracking branch 'origin/master'
Updates pass logic in get api key example Added create-workflow-submission-template example to running a workflow
Added cross-promotion of ica-ica-lazy
Split commands over multiple lines
Added tutorial on generating an input json through cwltool --make-template.
Updated getting started to contain the workflow run and optimisation scripts * Added new scripts to the commands docs
Updated the getting started wiki with some examples of the addition subcommands
Removed quotes which was combining cwl-ica and the subcommand validate-config-yamls
Updated getting started * Encourage using a 'sparse-checkout' to separate source code from cwl code * Merged specifying a user with 'Add your username' * Added pre-commit hook logic with new subcommand validate-config-yamls
Files mode changes
clarify or add further info about few concepts
updated help text and cwl-ica category-init command
Updated getting started doc Use shell over bash for code chunks. Updated toc - add tenant now its own section. Provided 'list-*' examples.
Updating getting-started wiki to reflect beta release
Updating getting started links
Updated wiki to reflect latest changes for beta release * Split commands by type in commands md * Added information on how to set the api-key collection command. * Updated the configuration file, removed unused configuration.yaml
Schema and expression and category inclusions Also added --username and --useremail parameters to cwl-ica configure commands
Create from template tools
First commit to wiki added the following files * Home.md * Structured home page * _Sidebar.md * For a decent looking and ordered sidebar * Best Practises guide * More work to be done here. * Need to link more between here and Contributions. * Commands * Initialised first major list of commands. * Configure * Show how configuration files should look like. * Contributions: * Initialised how contributions file should look. * Getting started guide: * Set up getting started guide.