UPDATE #43
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| # This workflow uses actions that are not certified by GitHub. | |
| # They are provided by a third-party and are governed by | |
| # separate terms of service, privacy policy, and support | |
| # documentation. | |
| # | |
| # See https://github.com/r-lib/actions/tree/master/examples#readme for | |
| # additional example workflows available for the R community. | |
| name: R Package CI for MacOS | |
| on: | |
| push: | |
| branches: [ "master" ] | |
| pull_request: | |
| branches: [ "master" ] | |
| permissions: | |
| contents: read | |
| jobs: | |
| build: | |
| runs-on: macos-latest | |
| strategy: | |
| matrix: | |
| os: [macos-latest] | |
| r-version: ['4.1.1'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install JAGS on macOS | |
| run: brew install jags | |
| - name: Install gcc (includes gfortran) | |
| run: brew install gcc | |
| - name: Ensure gfortran is in PATH | |
| run: | | |
| echo "/opt/homebrew/bin" >> $GITHUB_PATH | |
| echo "/opt/homebrew/opt/gcc/bin" >> $GITHUB_PATH | |
| - name: Check gfortran installation | |
| run: gfortran --version | |
| - name: Set up R ${{ matrix.r-version }} | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.r-version }} | |
| - name: Install TinyTeX | |
| run: | | |
| Rscript -e "install.packages('tinytex')" | |
| Rscript -e "tinytex::install_tinytex()" | |
| - name: Set CRAN mirror | |
| run: Rscript -e 'options(repos = c(CRAN = "https://cloud.r-project.org/"))' | |
| shell: /bin/bash -e {0} | |
| - name: Install remotes package | |
| run: Rscript -e 'install.packages("remotes")' | |
| - name: Install package dependencies | |
| run: Rscript -e 'install.packages(c("smacof", "basicspace", "vegan"), dependencies = TRUE)' | |
| - name: Install basicspace from GitHub | |
| env: | |
| GITHUB_PAT: ${{ secrets.MY_GITHUB_PAT }} | |
| run: Rscript -e 'remotes::install_github("cran/basicspace", force = TRUE)' | |
| - name: Install other R package dependencies | |
| run: Rscript -e 'install.packages(c("rjags", "ggplot2", "knitr"))' | |
| - name: Install rcmdcheck package | |
| run: Rscript -e 'install.packages("rcmdcheck")' | |
| - name: Check | |
| run: Rscript -e 'rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "error")' | |
| - name: Test (optional) | |
| run: Rscript -e 'devtools::test()' | |
| env: | |
| R_LIBS_USER: /Users/runner/work/_temp/Library | |
| TZ: UTC | |
| _R_CHECK_SYSTEM_CLOCK_: FALSE | |
| NOT_CRAN: true |