UPDATE #48
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| # This workflow uses actions that are not certified by GitHub. | |
| # They are provided by a third-party and are governed by | |
| # separate terms of service, privacy policy, and support | |
| # documentation. | |
| # | |
| # See https://github.com/r-lib/actions/tree/master/examples#readme for | |
| # additional example workflows available for the R community. | |
| name: R Package CI for macOS | |
| on: | |
| push: | |
| branches: [ "master" ] | |
| pull_request: | |
| branches: [ "master" ] | |
| permissions: | |
| contents: read | |
| jobs: | |
| build: | |
| runs-on: macos-latest | |
| strategy: | |
| matrix: | |
| os: [macos-latest] | |
| r-version: ['4.1.1'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install system dependencies on macOS | |
| run: | | |
| brew install jags | |
| brew install --cask mactex-no-gui | |
| brew install gfortran | |
| shell: bash | |
| - name: Configure Makevars for gfortran | |
| run: | | |
| mkdir -p ~/.R | |
| echo "FC = /opt/homebrew/opt/gcc/bin/gfortran" >> ~/.R/Makevars | |
| echo "F77 = /opt/homebrew/opt/gcc/bin/gfortran" >> ~/.R/Makevars | |
| echo "FLIBS = -L/opt/homebrew/opt/gcc/lib/gcc/current -lgfortran -lquadmath -lm" >> ~/.R/Makevars | |
| shell: bash | |
| - name: Set PATH for gfortran | |
| run: | | |
| echo "/opt/homebrew/bin" >> $GITHUB_PATH | |
| echo "/opt/homebrew/opt/gcc/bin" >> $GITHUB_PATH | |
| shell: bash | |
| - name: Check gfortran installation | |
| run: | | |
| which gfortran | |
| gfortran --version | |
| shell: bash | |
| - name: Set up R ${{ matrix.r-version }} | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.r-version }} | |
| - name: Install remotes package | |
| run: | | |
| Rscript -e "install.packages('remotes')" | |
| shell: Rscript {0} | |
| - name: Install package dependencies | |
| run: | | |
| Rscript -e "install.packages(c('smacof', 'ellipse', 'plyr', 'vegan'))" | |
| shell: Rscript {0} | |
| - name: Install basicspace from GitHub | |
| env: | |
| GITHUB_PAT: ${{ secrets.MY_GITHUB_PAT }} | |
| run: | | |
| Rscript -e "remotes::install_github('cran/basicspace', force = TRUE)" | |
| shell: Rscript {0} | |
| - name: Set CRAN mirror and install other R package dependencies | |
| env: | |
| GITHUB_PAT: ${{ secrets.MY_GITHUB_PAT }} | |
| run: | | |
| Rscript -e "options(repos = c(CRAN = 'https://cloud.r-project.org/')); install.packages(c('rjags', 'ggplot2', 'knitr'));" | |
| shell: Rscript {0} | |
| - name: Install rcmdcheck package | |
| run: | | |
| Rscript -e "install.packages('rcmdcheck')" | |
| shell: Rscript {0} | |
| - name: Run R CMD check | |
| env: | |
| PATH: /opt/homebrew/opt/gcc/bin:/opt/homebrew/bin:$PATH | |
| run: | | |
| Rscript -e "rcmdcheck::rcmdcheck(args = '--no-manual', error_on = 'error')" | |
| shell: Rscript {0} | |
| - name: Test (optional) | |
| run: | | |
| Rscript -e "devtools::test()" | |
| shell: Rscript {0} | |
| env: | |
| TZ: UTC | |
| _R_CHECK_SYSTEM_CLOCK_: false | |
| NOT_CRAN: true |