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Version 11
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LucaCinquini committed Feb 26, 2024
1 parent 52920cb commit ce758c9
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2 changes: 1 addition & 1 deletion airflow/dags/docker_cwl_pod.yaml
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Expand Up @@ -11,7 +11,7 @@ spec:
#serviceAccountName: airflow-worker
containers:
- name: cwl-docker
image: ghcr.io/unity-sds/unity-sps/sps-docker-cwl:development-tag10
image: ghcr.io/unity-sds/unity-sps/sps-docker-cwl:development-tag11
command: ["/usr/share/cwl/docker_cwl_entrypoint.sh"]
args: ["https://raw.githubusercontent.com/unity-sds/sbg-workflows/main/preprocess/sbg-preprocess-workflow.cwl", '{
"input_processing_labels": [
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2 changes: 1 addition & 1 deletion airflow/docker/cwl/docker_cwl_entrypoint.sh
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Expand Up @@ -34,7 +34,7 @@ echo "done sleeping"
# Execute CWL workflow
source /usr/share/cwl/venv/bin/activate
aws s3 ls
aws ssm get-parameter --name /sps/processing/workflows/edl_username
aws ssm get-parameter --name /sps/processing/workflows/edl_username --region us-west-2
cwl-runner --outdir $output_dir --no-match-user --no-read-only $cwl_workflow /tmp/job_args.json
deactivate

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