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| --- | ||
| site: freiburg | ||
| tags: [tools] | ||
| title: UseGalaxy.eu Tool Updates for 2025-02-09 | ||
| supporters: | ||
| - denbi | ||
| - elixir | ||
| --- | ||
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| On 2025-02-09, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #499](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#499/) | ||
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| ## Graph/Display Data | ||
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| - histogram was updated to [d0b9dd19e919](https://toolshed.g2.bx.psu.edu/view/devteam/histogram/d0b9dd19e919) | ||
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| ## GIS Data Handling | ||
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| - aquainfra_ogc_api_processes was updated to [af00a67d3649](https://toolshed.g2.bx.psu.edu/view/ecology/aquainfra_ogc_api_processes/af00a67d3649) | ||
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| ## Proteomics | ||
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| - bioconductor_scp was updated to [cd2f3a280463](https://toolshed.g2.bx.psu.edu/view/recetox/bioconductor_scp/cd2f3a280463) | ||
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| ## Metabolomics | ||
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| - gem_check_memote was updated to [927af80d5e38](https://toolshed.g2.bx.psu.edu/view/iuc/gem_check_memote/927af80d5e38) | ||
| - gem_escher_visualization was updated to [b79cf44068bc](https://toolshed.g2.bx.psu.edu/view/iuc/gem_escher_visualization/b79cf44068bc) | ||
| - gem_extract_exchange was updated to [d9893d41dd6a](https://toolshed.g2.bx.psu.edu/view/iuc/gem_extract_exchange/d9893d41dd6a) | ||
| - gem_flux_distribution was updated to [1c71660496fb](https://toolshed.g2.bx.psu.edu/view/iuc/gem_flux_distribution/1c71660496fb) | ||
| - bioconductor_msnbase_centroid was updated to [4018639dc0a5](https://toolshed.g2.bx.psu.edu/view/recetox/bioconductor_msnbase_centroid/4018639dc0a5) | ||
| - bioconductor_msnbase_smooth_chromatogram was updated to [492350f45be9](https://toolshed.g2.bx.psu.edu/view/recetox/bioconductor_msnbase_smooth_chromatogram/492350f45be9) | ||
| - bioconductor_msnbase_smooth_mz was updated to [00e058234fbf](https://toolshed.g2.bx.psu.edu/view/recetox/bioconductor_msnbase_smooth_mz/00e058234fbf) | ||
| - table_pandas_arithmetics was updated to [d4bacc06365e](https://toolshed.g2.bx.psu.edu/view/recetox/table_pandas_arithmetics/d4bacc06365e) | ||
| - table_pandas_rename_column was updated to [3f54cd56a65e](https://toolshed.g2.bx.psu.edu/view/recetox/table_pandas_rename_column/3f54cd56a65e) | ||
| - table_pandas_rename_columns_regex was updated to [505a8e975968](https://toolshed.g2.bx.psu.edu/view/recetox/table_pandas_rename_columns_regex/505a8e975968) | ||
| - table_pandas_transform was updated to [b722dba91064](https://toolshed.g2.bx.psu.edu/view/recetox/table_pandas_transform/b722dba91064) | ||
| - table_scipy_interpolate was updated to [0112f08c95ed](https://toolshed.g2.bx.psu.edu/view/recetox/table_scipy_interpolate/0112f08c95ed) | ||
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| ## Imaging | ||
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| - omero_get_id was updated to [c7b2650718fe](https://toolshed.g2.bx.psu.edu/view/ufz/omero_get_id/c7b2650718fe) | ||
| - omero_get_value was updated to [ecb13e93fae2](https://toolshed.g2.bx.psu.edu/view/ufz/omero_get_value/ecb13e93fae2) | ||
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| ## Statistics | ||
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| - saqc was updated to [55bbea0cdc60](https://toolshed.g2.bx.psu.edu/view/ufz/saqc/55bbea0cdc60) | ||
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| ## Text Manipulation | ||
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| - xlsx2tsv was updated to [a21347be425d](https://toolshed.g2.bx.psu.edu/view/ufz/xlsx2tsv/a21347be425d) | ||
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| ## QIIME 2 | ||
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| - qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2) | ||
| - qiime2__deblur__denoise_16S was updated to [b883cbea5623](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/b883cbea5623) | ||
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| ## FASTA/FASTQ | ||
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| - gfastats was updated to [7729cd89aaf7](https://toolshed.g2.bx.psu.edu/view/bgruening/gfastats/7729cd89aaf7) | ||
| - bbtools_bbnorm was updated to [e607b61a68ad](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_bbnorm/e607b61a68ad) | ||
| - fastp was updated to [10678d49d39e](https://toolshed.g2.bx.psu.edu/view/iuc/fastp/10678d49d39e) | ||
| - seqkit_fx2tab was updated to [13e101f5bb5d](https://toolshed.g2.bx.psu.edu/view/iuc/seqkit_fx2tab/13e101f5bb5d) | ||
| - seqkit_head was updated to [3c0120a0e35c](https://toolshed.g2.bx.psu.edu/view/iuc/seqkit_head/3c0120a0e35c) | ||
| - seqkit_locate was updated to [54e818ea7c4d](https://toolshed.g2.bx.psu.edu/view/iuc/seqkit_locate/54e818ea7c4d) | ||
| - seqkit_sort was updated to [3dc878f71e4d](https://toolshed.g2.bx.psu.edu/view/iuc/seqkit_sort/3dc878f71e4d) | ||
| - seqkit_stats was updated to [70b975dca7b4](https://toolshed.g2.bx.psu.edu/view/iuc/seqkit_stats/70b975dca7b4) | ||
| - seqkit_translate was updated to [f917a77055f5](https://toolshed.g2.bx.psu.edu/view/iuc/seqkit_translate/f917a77055f5) | ||
| - cutadapt was updated to [c0b2c2e39c9c](https://toolshed.g2.bx.psu.edu/view/lparsons/cutadapt/c0b2c2e39c9c) | ||
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| ## Annotation | ||
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| - hicexplorer_hicbuildmatrixmicroc was updated to [bce0ab313a89](https://toolshed.g2.bx.psu.edu/view/iuc/hicexplorer_hicbuildmatrixmicroc/bce0ab313a89) | ||
| - ppanggolin_all was updated to [6fdee3720de7](https://toolshed.g2.bx.psu.edu/view/iuc/ppanggolin_all/6fdee3720de7) | ||
| - ppanggolin_msa was updated to [d305623d5f41](https://toolshed.g2.bx.psu.edu/view/iuc/ppanggolin_msa/d305623d5f41) | ||
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| ## Mapping | ||
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| - minimap2 was updated to [66367287b4e6](https://toolshed.g2.bx.psu.edu/view/iuc/minimap2/66367287b4e6) | ||
| - pbmm2 was updated to [4436bcb33d39](https://toolshed.g2.bx.psu.edu/view/iuc/pbmm2/4436bcb33d39) | ||
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| ## Metagenomic Analysis | ||
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| - binette was updated to [6641160f2053](https://toolshed.g2.bx.psu.edu/view/iuc/binette/6641160f2053) | ||
| - biobox_add_taxid was updated to [2e0af1e2d487](https://toolshed.g2.bx.psu.edu/view/iuc/biobox_add_taxid/2e0af1e2d487) | ||
| - cami_amber was updated to [319b8aac032d](https://toolshed.g2.bx.psu.edu/view/iuc/cami_amber/319b8aac032d) | ||
| - cami_amber_add was updated to [741babee7bb3](https://toolshed.g2.bx.psu.edu/view/iuc/cami_amber_add/741babee7bb3) | ||
| - cami_amber_convert was updated to [40d5ea45b73f](https://toolshed.g2.bx.psu.edu/view/iuc/cami_amber_convert/40d5ea45b73f) | ||
| - fairy_cov was updated to [8a9a425f5c60](https://toolshed.g2.bx.psu.edu/view/iuc/fairy_cov/8a9a425f5c60) | ||
| - fairy_sketch was updated to [17d174efa4be](https://toolshed.g2.bx.psu.edu/view/iuc/fairy_sketch/17d174efa4be) | ||
| - phyloseq_add_rank_names was updated to [d34e74e40d60](https://toolshed.g2.bx.psu.edu/view/iuc/phyloseq_add_rank_names/d34e74e40d60) | ||
| - phyloseq_from_biom was updated to [847f433f202b](https://toolshed.g2.bx.psu.edu/view/iuc/phyloseq_from_biom/847f433f202b) | ||
| - phyloseq_from_dada2 was updated to [0b9d4ec77c4f](https://toolshed.g2.bx.psu.edu/view/iuc/phyloseq_from_dada2/0b9d4ec77c4f) | ||
| - phyloseq_plot_bar was updated to [94563110275d](https://toolshed.g2.bx.psu.edu/view/iuc/phyloseq_plot_bar/94563110275d) | ||
| - phyloseq_plot_ordination was updated to [bbd9d1022144](https://toolshed.g2.bx.psu.edu/view/iuc/phyloseq_plot_ordination/bbd9d1022144) | ||
| - phyloseq_plot_richness was updated to [d6cbeb48294d](https://toolshed.g2.bx.psu.edu/view/iuc/phyloseq_plot_richness/d6cbeb48294d) | ||
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| ## Multiple Alignments | ||
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| - mummer_delta_filter was updated to [5c7e6ef78006](https://toolshed.g2.bx.psu.edu/view/iuc/mummer_delta_filter/5c7e6ef78006) | ||
| - mummer_dnadiff was updated to [29662f643859](https://toolshed.g2.bx.psu.edu/view/iuc/mummer_dnadiff/29662f643859) | ||
| - mummer_mummer was updated to [b7bc272143fb](https://toolshed.g2.bx.psu.edu/view/iuc/mummer_mummer/b7bc272143fb) | ||
| - mummer_mummerplot was updated to [029a793f39b6](https://toolshed.g2.bx.psu.edu/view/iuc/mummer_mummerplot/029a793f39b6) | ||
| - mummer_nucmer was updated to [27fff8d3793e](https://toolshed.g2.bx.psu.edu/view/iuc/mummer_nucmer/27fff8d3793e) | ||
| - mummer_show_coords was updated to [4c89814871e8](https://toolshed.g2.bx.psu.edu/view/iuc/mummer_show_coords/4c89814871e8) | ||
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| ## NCBI Blast | ||
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| - diamond was updated to [60f307965815](https://toolshed.g2.bx.psu.edu/view/bgruening/diamond/60f307965815) | ||
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| ## Nanopore | ||
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| - nanoplot was updated to [2a9afed42353](https://toolshed.g2.bx.psu.edu/view/iuc/nanoplot/2a9afed42353) | ||
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| ## Phylogenetics | ||
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| - ete_treeviewer was updated to [2d4402c70eed](https://toolshed.g2.bx.psu.edu/view/iuc/ete_treeviewer/2d4402c70eed) | ||
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| ## RNA Analysis | ||
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| - cemitool was updated to [51a3b375b7b8](https://toolshed.g2.bx.psu.edu/view/iuc/cemitool/51a3b375b7b8) | ||
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| ## Single-cell | ||
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| - mudata_import_export was updated to [089a6101d5d9](https://toolshed.g2.bx.psu.edu/view/iuc/mudata_import_export/089a6101d5d9) | ||
| - plot_muon was updated to [36f2cd69d20e](https://toolshed.g2.bx.psu.edu/view/iuc/plot_muon/36f2cd69d20e) | ||
| - preprocess_muon was updated to [678260997e94](https://toolshed.g2.bx.psu.edu/view/iuc/preprocess_muon/678260997e94) | ||
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| ## None | ||
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| - data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78) | ||
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