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This repository has been archived by the owner on Jan 24, 2024. It is now read-only.

Releases: varfish-org/varfish-annotator

v0.24

01 Jul 14:00
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  • Fixing problem with self-test on gnomAD genomes with chrY (#51)
  • Suppress writing out *Carriers information in INFO column for SVs (#53)

v0.23

29 Jun 14:55
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IMPORTANT COMPATIBILITY NOTE:
For annotating SVs, the output of this version is not compatible with varfish-server v1.2 (Anthenea) and early versions of the v2 (Bollonaster) development branch.
You can generate compatible files by adding the --opt-out=chrom2-columns,dbcounts-columns as arguments to annotate-svs.

  • Adding chrom2/count columns to output of annotate-sv (#41)
  • Writing out BND mates for Delly (#45)

v0.22

29 Jun 11:47
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  • Adding db-stats command (#25)
  • Adding issue templates (#28)
  • Adding continuous integration with GitHub Actions (#28)
  • Adding unit tests for annotate command (#31)
  • Adding unit tests for annotate-sv command (#33)
  • Writing out gzip-ed files if output file name ends in .gz (#11)
  • Do not write out asterisk alleles (#18)
  • Adding tests for GRCh38 (#22)
  • Adding self-tests for annotation (#27)
  • Allow properly counting hemizygous variants when pedigree file is given (#36)

v0.21

12 Apr 12:39
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v0.21

  • Bumping jannovar-core dependency for fixes in chrMT annotation.

v0.20

27 Dec 09:58
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  • Further bumping of jannovar-core against log4shell.
  • Fixing problem with missing SVMETHOD annotation of SV VCFs.

v0.19

13 Dec 08:48
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  • Bumping jannovar-core dependencies against log4shell vulnerability.

v0.18

15 Oct 09:29
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  • Fixing problems with querying in GRCh38.

v0.17

11 Oct 20:10
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  • Adding support for GRCh38 release.

v0.16

27 Aug 13:25
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  • Fixing import of ExAC r1 VCF.
  • Prevent import of REF and ALT alleles with sizes above 1000bp (field lengths in database).

v0.15

12 Apr 11:25
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  • Properly removing "chr" prefix for data aligned to hg19.
  • Checking whether the supported release GRCh37/hg19 was used.
    Will only allow processing of such genomes and block variants from GRCh38/hg38 which would lead to incorrect results.